Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_C13
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.83 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 20/77 (25%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
 Frame = -1

Query: 763 PXXXHXRRXGPXAGXP--PXGPPXQPXXPPRXRXXPRPAXXXPXXXXXXPXPGXXXXXXX 590
           P   H  +    A  P  P  P  Q    P     PRP+   P      P P        
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPS-KAPPIP 168

Query: 589 GXXPPPPTPXXGAXGPP 539
              PPP  P      PP
Sbjct: 169 SSLPPPAQPAAPVKSPP 185


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = -1

Query: 694 PXXPPRXRXXPRPAXXXPXXXXXXPXPGXXXXXXXGXXPPPPTPXXGAXGPP 539
           P  PP     P PA          P  G       G  PPPP P     GPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMG-------GPPPPPPPPGVAGAGPP 776



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/58 (27%), Positives = 16/58 (27%)
 Frame = -1

Query: 718 PPXGPPXQPXXPPRXRXXPRPAXXXPXXXXXXPXPGXXXXXXXGXXPPPPTPXXGAXG 545
           PP  PP      P     P P           P P           PPPP P   A G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/76 (22%), Positives = 18/76 (23%)
 Frame = -1

Query: 766 PPXXXHXRRXGPXAGXPPXGPPXQPXXPPRXRXXPRPAXXXPXXXXXXPXPGXXXXXXXG 587
           PP      R  P  G         P  PP            P      P P        G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373

Query: 586 XXPPPPTPXXGAXGPP 539
             PPP +       PP
Sbjct: 374 RQPPPLSSSRAVSNPP 389



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 27/117 (23%), Positives = 29/117 (24%), Gaps = 1/117 (0%)
 Frame = -2

Query: 828 PPGEXXPPXXXEGEXPPXXETPPXXXTXDG-XGPPRXXPXXAPRXSPXXHXAXEXXPAXR 652
           P G   PP       P     PP   +      PP   P    R +P          A R
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN---ASR 411

Query: 651 XXXPXXPRRXPRXGGXGXRXXGXXPPPRXPRXXPXAPPXGXXXXXXTPGXXGXXGXP 481
              P  P   P              PP  P   P APP         P   G    P
Sbjct: 412 TSTPPVP-TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
 Frame = -1

Query: 724  GXPPXGPPXQPXXPPRXRXXPR-PAXXXPXXXXXXPXPGXXXXXXXGXX--PPPPTPXXG 554
            G  P  P   P   P+    P+  A   P      P P        G    PPPP P   
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739

Query: 553  AXGPPXGG 530
            A   P  G
Sbjct: 1740 APSVPNPG 1747



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 733  PXAGXPPXGPPXQPXXPPRXRXXPRPAXXXP 641
            P +  PP   P  P  PP     P PA   P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 828 PPGEXXPPXXXEGEXPPXXETPP 760
           PPG   PP    G  PP    PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,608
Number of Sequences: 5004
Number of extensions: 30506
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)