Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C10
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 38 0.001
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.47
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.4
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.9
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.3
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 5.8
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.8
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 7.6
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 7.6
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +1
Query: 133 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 312
DI FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 313 GSALSPLLFSLYINDI 360
GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.47
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 248 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 424
++D+ RVP P S + K+PPS I + P L+ P RSS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 425 GRRRCFIDDFRPQLPP 472
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 484 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 600
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 654 PEGXNI*ASPSTVGRHSXPTSXRYAIVPPSS*DVSTR 764
P G N + ST H P+S R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 257 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 412
+ +++R P+ P R PP R + I I PGL SS TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 243 VRQVVSYDEHEPVWHSHV 190
+R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.8
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +1
Query: 361 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 531
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 532 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 621
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 301 GVPQGSALSPLLFSLYINDI 360
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 3 LLIDEQFGFXRQTLVRPSSAPPHGAHLTRAEQAETHSD 116
LLID FGF +T+ + PHG + R TH D
Sbjct: 144 LLIDANFGFEMETMEFLNILAPHG--MPRIMGVLTHLD 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,830
Number of Sequences: 5004
Number of extensions: 80268
Number of successful extensions: 271
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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