Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_C09
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.48 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 19/62 (30%), Positives = 19/62 (30%)
 Frame = -3

Query: 626 PPXXGAPPXIAXXXPXXPXPXXPXXXXPXPPAPXPXXGGGGXLXXXXXXGPCPPPXAFLX 447
           PP            P    P  P    P PP P P   G G         P PPP A   
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG------PPPPPPPPPAVSA 787

Query: 446 GG 441
           GG
Sbjct: 788 GG 789


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 27/103 (26%), Positives = 28/103 (27%), Gaps = 3/103 (2%)
 Frame = -3

Query: 629  APPXXGAPPXIAXXXPXXPXPXX-PXXXXPX--PPAPXPXXGGGGXLXXXXXXGPCPPPX 459
            APP   AP   +   P  P P   P    P   PP P P               P P P 
Sbjct: 1062 APPPVPAP---SSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118

Query: 458  AFLXGGGXXLKKXXGGGGXPPPGGXXPXXKKKXXGPPXKGXGG 330
                G     K        P P G  P  K     PP     G
Sbjct: 1119 ----GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG 1157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,304
Number of Sequences: 5004
Number of extensions: 25354
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)