Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C08
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.24
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.42
12_02_0640 - 21447470-21448309 30 2.9
12_02_0635 - 21430245-21431156 30 2.9
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 30 2.9
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 29 3.9
03_01_0515 - 3864796-3865425 29 6.8
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 9.0
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.5 bits (73), Expect = 0.24
Identities = 23/90 (25%), Positives = 27/90 (30%)
Frame = -2
Query: 509 PGPXPXXXXPXTXPAAXRXPRRPXGSKEGXLAVXRXXAXAPPPPGRXXXGXXXXXXXPPP 330
P P P P+ P R S+ +A + APPPP PPP
Sbjct: 273 PAPAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPPPP---PPPKPAAAAPPPP 329
Query: 329 XXPGXEKKKTXGXXPRXPXXXXVSXPXPPP 240
P P P P PPP
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/91 (27%), Positives = 27/91 (29%)
Frame = -2
Query: 509 PGPXPXXXXPXTXPAAXRXPRRPXGSKEGXLAVXRXXAXAPPPPGRXXXGXXXXXXXPPP 330
P P P P PAA P P + PP G PPP
Sbjct: 311 PAPPPP---PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367
Query: 329 XXPGXEKKKTXGXXPRXPXXXXVSXPXPPPG 237
PG +K G P P S P PG
Sbjct: 368 PPPGGKK----GGPPPPPPKGGASRPPAAPG 394
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.7 bits (71), Expect = 0.42
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = -2
Query: 389 PPPPGRXXXGXXXXXXXPPPXXPGXEKKKTXGXXPRXPXXXXVSXPXPPP 240
PPPP G PP P K+ P P P PPP
Sbjct: 717 PPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPP 766
Score = 32.3 bits (70), Expect = 0.55
Identities = 22/91 (24%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Frame = -2
Query: 509 PGPXPXXXXPXTXPAAXRXPRRPXGSKEGXLAVXRXXAXAPPPP-GRXXXGXXXXXXXPP 333
P P P P P P P + A + PPPP PP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPP 609
Query: 332 PXXPGXEKKKTXGXXPRXPXXXXVSXPXPPP 240
P P P P + P PPP
Sbjct: 610 PILPNRSVPPPPPPPPPLPNHSVLPPPPPPP 640
Score = 31.1 bits (67), Expect = 1.3
Identities = 24/91 (26%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Frame = -2
Query: 509 PGPXPXXXXPXTXPAAXRXPRRPXGSKEGXLAVXRXXAXAPPP-PGRXXXGXXXXXXXPP 333
P P P P P P P G+K PPP P PP
Sbjct: 535 PSPSPTAAAPPPPPPP---PPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPP 591
Query: 332 PXXPGXEKKKTXGXXPRXPXXXXVSXPXPPP 240
P P P P S P PPP
Sbjct: 592 PPLPNCLVPSPPPPPPPPPILPNRSVPPPPP 622
>12_02_0640 - 21447470-21448309
Length = 279
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = -2
Query: 443 PXGSKEGXLAVXRXXAXAPPPPGRXXXGXXXXXXXPPPXXPGXEKKKTXGXXPRXPXXXX 264
P K+ + R A PPP R PP PG KK P P
Sbjct: 194 PTTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPKK------PATPGAVV 247
Query: 263 VSXPXPP 243
V P PP
Sbjct: 248 VEQPGPP 254
>12_02_0635 - 21430245-21431156
Length = 303
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = -2
Query: 443 PXGSKEGXLAVXRXXAXAPPPPGRXXXGXXXXXXXPPPXXPGXEKKKTXGXXPRXPXXXX 264
P K+ + R A PPP R PP PG KK P P
Sbjct: 191 PTTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPKK------PATPGAVV 244
Query: 263 VSXPXPP 243
V P PP
Sbjct: 245 VEQPGPP 251
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = -3
Query: 400 RRXRPPPPDGXXXGXXXRXXXPPPXXRGXKKKRRXXGCPAXXFXXXFPXXXRP 242
RR RP P G R PPP G + GC P RP
Sbjct: 13 RRSRPGPSPPAYGGCAKRSAPPPPLLAGKTTRSNLVGCNFDFCPLKLPPFPRP 65
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = -2
Query: 452 PRRPXGSKEGXLAVXRXXAXAPPPPGRXXXGXXXXXXXPPPXXPGXEKKK 303
P+ P S A A A PPP G PPP G + K
Sbjct: 51 PKPPPSSSSSAAATPAPPAPAAPPPPTSRRGGGGGAALPPPQAQGVDPTK 100
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/71 (26%), Positives = 21/71 (29%)
Frame = -2
Query: 452 PRRPXGSKEGXLAVXRXXAXAPPPPGRXXXGXXXXXXXPPPXXPGXEKKKTXGXXPRXPX 273
P P + LA +PPPP PPP P P P
Sbjct: 40 PSPPTEASPPPLAPPPSVTSSPPPPAAGPL------MPPPPPPPSVTSSPPPPPLPPPPP 93
Query: 272 XXXVSXPXPPP 240
S P PPP
Sbjct: 94 PPAASPPPPPP 104
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = -2
Query: 392 APPPPGRXXXGXXXXXXXPPPXXPGXEKKKTXGXXPRXPXXXXVSXPXPPP 240
+PPPP R PP P G P P + P PPP
Sbjct: 1064 SPPPPQRENTSVGIQGGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPP 1114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,563,069
Number of Sequences: 37544
Number of extensions: 315086
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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