Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C07
(924 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 34 0.18
11_06_0610 - 25449085-25453284 29 3.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 3.9
07_03_0600 + 19866757-19867218,19867920-19868429 29 3.9
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63... 29 3.9
02_01_0302 - 2021221-2023305 29 3.9
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644... 29 5.2
04_01_0621 - 8166221-8166556 28 9.1
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.9 bits (74), Expect = 0.18
Identities = 30/116 (25%), Positives = 33/116 (28%)
Frame = +3
Query: 468 PPXSXGPGXXXAXXGXGPTXXXXSARXPXPPXXIXXFSGDHXXQDXAPPPPQXXXGXXGX 647
PP GP A P+ P PP + +G PPPP
Sbjct: 276 PPPPAGP-PPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPP 334
Query: 648 LPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXGSGXXTLXXGXSP 815
PAP A G P P P P A P P P G G P
Sbjct: 335 PPAPSPSAAGAGSGPPP----PPPPAAP-AAPRPPGPGPGPPPPPGAAGRGGGGPP 385
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/110 (21%), Positives = 31/110 (28%)
Frame = +3
Query: 555 PPXXIXXFSGDHXXQDXAPPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPY 734
PP S ++ P PP+ P P + P P P P
Sbjct: 587 PPTPESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPP--PPAPEGHTPSPPEST 644
Query: 735 XAGETRXPXPSSPXGSGXXTLXXGXSPXXXXXXPEVXXAPSGXXXXTSSP 884
E P P S S G +P P +P +SSP
Sbjct: 645 PPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP 694
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/59 (27%), Positives = 21/59 (35%)
Frame = +3
Query: 597 QDXAPPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSP 773
+ +PPPP G +P+P + P P P G T P SSP
Sbjct: 690 ESSSPPPP----APEGHMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSP 744
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 3.9
Identities = 27/116 (23%), Positives = 31/116 (26%), Gaps = 1/116 (0%)
Frame = +3
Query: 510 GXGPTXXXXSARXPXPPXXIXXFSGDHXXQDXAPPPPQXXXGXXGXLPAPGXDXAXPSRG 689
G P P P F PPPP G P P P
Sbjct: 29 GPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFG--PGPPQQQQPPP-- 84
Query: 690 XPXXXXRXPHPXXPYXAGETRXPXPSSPXGSGXXTLXXGXSPXXXXXXP-EVXXAP 854
P + P P PY ++ P P P S + P P E AP
Sbjct: 85 PPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAP 140
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Frame = +3
Query: 468 PPXSXGPGXXXAXXGXGPTXXXXSARXPXPPXXIXXFSGDHXXQDXAPPPPQXXXGXX-G 644
PP + P A G P A P + Q APPPPQ G
Sbjct: 58 PPHAPPPQQPPAMWGQPPPPPPQYAPPPPQQFQLPHQQYAPPPQHYAPPPPQQQYGAQMA 117
Query: 645 XLPAPGXD 668
PAPG D
Sbjct: 118 GGPAPGGD 125
>04_01_0065 -
636957-637082,637165-637251,637365-637625,637695-638100,
640036-640223
Length = 355
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = -1
Query: 312 FVDPIHLXXCLYSPGGVGLTHVSMSHMQVQVDYDFGVRGGXPDXTLRGASRS*GSVMLRF 133
++ +H C+ P G G+ ++S+ + D + G PD L G + +++ R
Sbjct: 6 YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64
Query: 132 RILPH 118
I PH
Sbjct: 65 EIYPH 69
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/69 (24%), Positives = 20/69 (28%)
Frame = +3
Query: 651 PAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXGSGXXTLXXGXSPXXXXX 830
P PG +G P P PY + P PS P S G +
Sbjct: 387 PTPGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSYPAPPGSNTPSYPS 446
Query: 831 XPEVXXAPS 857
P PS
Sbjct: 447 PPSSATTPS 455
>07_03_0056 -
12863599-12863715,12864107-12864235,12864322-12864408,
12864657-12864848,12864930-12865106,12865174-12865420,
12865510-12865619,12865751-12865851,12865937-12866000,
12866433-12866522,12866621-12866719,12866817-12866897,
12867197-12867535
Length = 610
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 285 CLYSPGGVGLTHVSMSHMQVQVDYDFGVR 199
C Y GVG S HMQ Q Y++GVR
Sbjct: 8 CSYQTNGVGALKQS-PHMQFQQSYNYGVR 35
>04_01_0621 - 8166221-8166556
Length = 111
Score = 28.3 bits (60), Expect = 9.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 132 ENATSLTLMIDSLLARXDR-DXPPXLQNRSQPEPACETC*HA*VRLHRANTGXXSNELDP 308
E ATS+ L+ LL D P ++ + P+CE LHR N S+E++
Sbjct: 40 EKATSVFLIRSPLLFSQDLFAFPRREESCATMMPSCEELRKEQSLLHRKNAELPSSEVNF 99
Query: 309 QTTEWERRGVG 341
+ +WE +G
Sbjct: 100 NSLQWEDLKLG 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,777,910
Number of Sequences: 37544
Number of extensions: 416542
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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