Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C07
(924 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 33 0.38
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 33 0.38
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 31 0.88
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 1.2
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 1.2
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 31 1.5
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 31 1.5
Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical pr... 30 2.7
AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle colla... 30 2.7
AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle colla... 30 2.7
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 29 4.7
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 29 4.7
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 6.2
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 28 8.2
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 8.2
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 28 8.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.2
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 32.7 bits (71), Expect = 0.38
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +3
Query: 612 PPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXG 779
P P G G PG D A +G P + HP AG+ P P G
Sbjct: 223 PGPSGLPGDQGQAGRPGSDGAPGPQGPPGPPGQQGHPGQAGPAGQPGQPGPQGERG 278
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 606 APPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPS 767
AP P G G PG A P P PHP TR P PS
Sbjct: 63 APRPSGQPPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPRPTRLPRPS 116
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 31.5 bits (68), Expect = 0.88
Identities = 25/94 (26%), Positives = 26/94 (27%)
Frame = +2
Query: 323 GTXGSGXXPLPGGPXQRPCXPDXEGLXXXAXSPXARHXGGPA*XXXXXPPRXXRPRXTXG 502
G G P P GP P P +G A SP R P PP P G
Sbjct: 134 GEAGGAGPPGPPGPDGNPGAPGNDG---EAGSPGTRSISSPGPAGPAGPPGPPGPDGAPG 190
Query: 503 RXXXXPDRGXXIRPXSXAXXXDXXVFGGPXXPGQ 604
G P G P PGQ
Sbjct: 191 GGSGPGPAGPAGPPGPDGNPGSAGADGQPGGPGQ 224
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 31.5 bits (68), Expect = 0.88
Identities = 25/94 (26%), Positives = 26/94 (27%)
Frame = +2
Query: 323 GTXGSGXXPLPGGPXQRPCXPDXEGLXXXAXSPXARHXGGPA*XXXXXPPRXXRPRXTXG 502
G G P P GP P P +G A SP R P PP P G
Sbjct: 134 GEAGGAGPPGPPGPDGNPGAPGNDG---EAGSPGTRSISSPGPAGPAGPPGPPGPDGAPG 190
Query: 503 RXXXXPDRGXXIRPXSXAXXXDXXVFGGPXXPGQ 604
G P G P PGQ
Sbjct: 191 GGSGPGPAGPAGPPGPDGNPGSAGADGQPGGPGQ 224
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXGSG 785
PPPP G P PG P G P R P+ PY P P G G
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYGPPG-GYPPQQQRPPYQAQPYPG----PPPPQQQRGYG 733
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXGSG 785
PPPP G P PG P G P R P+ PY P P G G
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYGPPG-GYPPQQQRPPYQAQPYPG----PPPPQQQRGYG 733
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Frame = +3
Query: 618 PQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXP----XPSSPXGSG 785
PQ G G APG +RG P R +P P G P P SP G G
Sbjct: 194 PQGPLGPQGPNGAPGLRGMRGARGQPGRPGRDGNPGMPGDCGPPGAPGSDGKPGSPGGKG 253
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Frame = +3
Query: 618 PQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXP----XPSSPXGSG 785
PQ G G APG +RG P R +P P G P P SP G G
Sbjct: 194 PQGPLGPQGPNGAPGLRGMRGARGQPGRPGRDGNPGMPGDCGPPGAPGSDGKPGSPGGKG 253
>Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical
protein ZK836.1 protein.
Length = 324
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 618 PQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXP-XPSSPXGSG 785
PQ G G APG +RG P R P P G T P +P SG
Sbjct: 168 PQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQPGMPGEMGPTGAPGDDGAPGASG 224
>AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle collagen
LON-3 protein.
Length = 324
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 618 PQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXP-XPSSPXGSG 785
PQ G G APG +RG P R P P G T P +P SG
Sbjct: 168 PQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQPGMPGEMGPTGAPGDDGAPGASG 224
>AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle collagen
protein LON-3 protein.
Length = 324
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 618 PQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXP-XPSSPXGSG 785
PQ G G APG +RG P R P P G T P +P SG
Sbjct: 168 PQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQPGMPGEMGPTGAPGDDGAPGASG 224
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.5 bits (63), Expect = 3.6
Identities = 27/114 (23%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Frame = +3
Query: 549 PXPPXXIXXFSGDHXXQDXAPPPPQXXXGXXGXLPAPGXDXAX--PSRGXPXXXXRXPHP 722
P P D A P P G G G D A P P P P
Sbjct: 163 PGPDGPAGPAGPDGEAGSPAAPSPPGPPGPPGPAGPAGNDGAAGTPGPDGPAGESTYPEP 222
Query: 723 XXPYXAGETRXPXPSSPXGSGXXTLXXGXSPXXXXXXPEVXXAPSGXXXXTSSP 884
P AG P P G+ T G + P P G P
Sbjct: 223 AGPGPAGPPGPAGPPGPDGAS-PTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPP 275
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/87 (25%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGX---PXXXXRXPHPXXPYXAGETRXPXPSSPXG 779
PP P G G PG A + G + P P P AG P P P G
Sbjct: 111 PPGPGGSPGKPGKPGKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPDGPAG 170
Query: 780 SGXXTLXXGXSPXXXXXXPEVXXAPSG 860
G P P+G
Sbjct: 171 PAGPDGEAGSPAAPSPPGPPGPPGPAG 197
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/82 (25%), Positives = 25/82 (30%)
Frame = +1
Query: 310 KRPSGNXGEWXXTTXRGXPPTPVXAXRGRAXXGXXQPXRTAXXXPGVXXXXGAPPXXXAP 489
K P+GN G +G P P A + P G P AP
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAP 212
Query: 490 XHXRPXXAXARPXXXNPPGLPG 555
P A +P N PG G
Sbjct: 213 GSQGPPGAPGQPGSGNAPGPAG 234
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.6
Identities = 27/114 (23%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Frame = +3
Query: 549 PXPPXXIXXFSGDHXXQDXAPPPPQXXXGXXGXLPAPGXDXAX--PSRGXPXXXXRXPHP 722
P P D A P P G G G D A P P P P
Sbjct: 162 PGPDGPAGPAGPDGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEP 221
Query: 723 XXPYXAGETRXPXPSSPXGSGXXTLXXGXSPXXXXXXPEVXXAPSGXXXXTSSP 884
P AG P P G+ T G + P P G P
Sbjct: 222 AAPGPAGPPGPAGPPGPDGAS-PTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPP 274
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.6
Identities = 29/109 (26%), Positives = 31/109 (28%)
Frame = +2
Query: 347 PLPGGPXQRPCXPDXEGLXXXAXSPXARHXGGPA*XXXXXPPRXXRPRXTXGRXXXXPDR 526
P P GP RP P G +P A G A PP +P PD
Sbjct: 119 PGPPGPGGRPGKPGTPGKPGAPGNPGASGKGAAAPCEPSTPP-PCQPCPAGPPGPPGPD- 176
Query: 527 GXXIRPXSXAXXXDXXVFGGPXXPGQXAPXXPXXXGGXRXXXGXXXGXG 673
G P GP PG P P G G G G
Sbjct: 177 GTPGEPGGPGPAGSP---AGPSGPGPAGPPGPAGPPGNDGQPGQPGGPG 222
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/82 (25%), Positives = 25/82 (30%)
Frame = +1
Query: 310 KRPSGNXGEWXXTTXRGXPPTPVXAXRGRAXXGXXQPXRTAXXXPGVXXXXGAPPXXXAP 489
K P+GN G +G P P A + P G P AP
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAP 212
Query: 490 XHXRPXXAXARPXXXNPPGLPG 555
P A +P N PG G
Sbjct: 213 GPQGPPGAPGQPGSGNAPGPAG 234
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/70 (25%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXP-HPXXPYXAGETRXPXPSSPXGSG 785
PPPPQ G P P P P + P P P G G G
Sbjct: 1285 PPPPQMTGPPIGIYPGPPAPGNLPGSSRPSGNRKQPLPPPPPMIRGPPPDQMYRDRSGGG 1344
Query: 786 XXTLXXGXSP 815
++ G P
Sbjct: 1345 GGSMRGGFPP 1354
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/70 (25%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXP-HPXXPYXAGETRXPXPSSPXGSG 785
PPPPQ G P P P P + P P P G G G
Sbjct: 1285 PPPPQMTGPPIGIYPGPPAPGNLPGSSRPSGNRKQPLPPPPPMIRGPPPDQMYRDRSGGG 1344
Query: 786 XXTLXXGXSP 815
++ G P
Sbjct: 1345 GGSMRGGFPP 1354
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/59 (27%), Positives = 21/59 (35%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXGSG 785
PP P G G +PG D + G + +P P G+ PS P G
Sbjct: 158 PPGPSGDAGSNGNPGSPGQDGQPGAPGNKGPSGQNGNPGAPGAPGQPGQDAPSEPITPG 216
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 6.2
Identities = 29/125 (23%), Positives = 32/125 (25%), Gaps = 2/125 (1%)
Frame = +3
Query: 414 PAPXHGTXXARRXEXXGXPPXSXGPGXXXAXXGXGPTXXXXSARXPXPPXXIXX--FSGD 587
P P A R G P G A GP S P P +
Sbjct: 190 PGPPGPAGQAGRPGNDGQPGAPSFGGGVGAPGAPGPAGDAGSPGQPGAPGQPGRPGKNAQ 249
Query: 588 HXXQDXAPPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPS 767
PP P G G APG G P R P P G+ P
Sbjct: 250 GGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPDGQPGAPGND 309
Query: 768 SPXGS 782
G+
Sbjct: 310 GTPGT 314
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.2
Identities = 31/150 (20%), Positives = 35/150 (23%), Gaps = 1/150 (0%)
Frame = +3
Query: 339 GXXHXPGXPXNARAXXTXKGXXXXXPAPXHGTXXARRXEXXGXPPXSXGPGXXXAXXGXG 518
G PG P T P G PP GP A G
Sbjct: 114 GQPGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIPGDNGPPGEQGPKGPDAAPGEP 173
Query: 519 PTXXXXSARXPXPPXXIXXFSGDHXXQDXAPPPPQXXXGXXGXLPAPGXDXAXPSRGXPX 698
P G + A P P G G PG + G P
Sbjct: 174 GPKGPIGPPGPPGQAGAPGEPGSPAKSEPAVPGPPGPPGQAGQQGPPGPPGSNGIDGAPG 233
Query: 699 XXXRXPHPXXPYXAGETRXP-XPSSPXGSG 785
P P G+ P P +P G
Sbjct: 234 APGAKGEPGTPGEPGKDGEPGKPGTPGQDG 263
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.2
Identities = 30/117 (25%), Positives = 33/117 (28%)
Frame = +2
Query: 347 PLPGGPXQRPCXPDXEGLXXXAXSPXARHXGGPA*XXXXXPPRXXRPRXTXGRXXXXPDR 526
P P GP P P +G P H GG P P+ G
Sbjct: 157 PCPQGPPGAPGSPGPQGNAGAPGQPG--HGGGSG------APGPAGPKGQRGAPGHPGQA 208
Query: 527 GXXIRPXSXAXXXDXXVFGGPXXPGQXAPXXPXXXGGXRXXXGXXXGXGXPFEGTPS 697
G RP A P PGQ P P G G G P + PS
Sbjct: 209 GSPGRPGVDAQSQS-----NPGAPGQAGPQGPPGPSGAPGAPGGPGYPGPPGQKGPS 260
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 28.3 bits (60), Expect = 8.2
Identities = 26/100 (26%), Positives = 30/100 (30%), Gaps = 5/100 (5%)
Frame = +2
Query: 326 TXGSGXXPLPGGPXQRPCXPDXEGLXXXAXSPXARHXGGPA*XXXXXPPRXXRP-----R 490
T GS P P GP P +G + P R P PP P
Sbjct: 185 TPGSPGPPGPPGPPGYPGRQGCQGKDGPSGDPGLRFIKTPGPVGAAGPPGPPGPPGSPGE 244
Query: 491 XTXGRXXXXPDRGXXIRPXSXAXXXDXXVFGGPXXPGQXA 610
T G G +P + VFG PGQ A
Sbjct: 245 NTEGAPGLDGPLGPPGKPGTPGTDGAPGVFGDDGVPGQDA 284
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXGS 782
PPPP G LP P + P G P P A E P S P GS
Sbjct: 299 PPPPPRGSPPTGSLPPPQAGGSPPPAG---TGSPPPPPRQKRQAPERSPPTGSPPTGS 353
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXGS 782
PPPP G LP P + P G P P A E P S P GS
Sbjct: 320 PPPPPRGSPPTGSLPPPQAGGSPPPAG---TGSPPPPPRQKRQAPERSPPTGSPPTGS 374
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +3
Query: 609 PPPPQXXXGXXGXLPAPGXDXAXPSRGXPXXXXRXPHPXXPYXAGETRXPXPSSPXGS 782
PPPP G LP P + P G P P A E P S P GS
Sbjct: 305 PPPPPRGSPPTGSLPPPQAGGSPPPAG---TGSPPPPPRQKRQAPERSPPTGSPPTGS 359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,343,128
Number of Sequences: 27780
Number of extensions: 323733
Number of successful extensions: 1014
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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