Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C06
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 183 3e-47
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 183 3e-47
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 29 0.80
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 3.2
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 26 7.4
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 7.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 9.8
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.8
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 183 bits (445), Expect = 3e-47
Identities = 99/224 (44%), Positives = 124/224 (55%)
Frame = +1
Query: 100 LSVARPLXVGVFREE*DGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 279
++ ARP V ++ ++ + FVFKAPIRPDLV VH +++KN RQPY VS++A
Sbjct: 1 MAAARPT-VSIYNKD-GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58
Query: 280 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 459
GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 59 GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118
Query: 460 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLGCSRQSPRDQQDQTGCHLPXAPQGMV 639
ARGH IE+IPE+PL Q+ + L +
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYR 178
Query: 640 *YPLRCTSLSVFVLVRVNAQPSSYXRKGXLIIFNKDQGXTRAFR 771
S + R+G L++FN+D G +AFR
Sbjct: 179 DVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFR 222
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 183 bits (445), Expect = 3e-47
Identities = 95/197 (48%), Positives = 113/197 (57%)
Frame = +1
Query: 181 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 360
FVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26 FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85
Query: 361 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 540
RSGQ AFGNMCR GRMFAPTK WR+WH ARGH IE
Sbjct: 86 RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145
Query: 541 KIPELPLGCSRQSPRDQQDQTGCHLPXAPQGMV*YPLRCTSLSVFVLVRVNAQPSSYXRK 720
+IPE+PL Q+ + L + S + R+
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRR 205
Query: 721 GXLIIFNKDQGXTRAFR 771
G L++FN+D G +AFR
Sbjct: 206 GPLVVFNEDAGIVKAFR 222
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 29.1 bits (62), Expect = 0.80
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 572 DKVQEINKTKQAVIFLXRLKAWSDIP*GVQVSASSCW 682
D V+ K KQ FL + +W D+P + CW
Sbjct: 81 DAVKSTIKCKQCQSFLTSISSWKDLPSANWMEMLDCW 117
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 3.2
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +2
Query: 431 GVGTVASTSDSGERPWRQPLLL-PASQRSFRLE-----DTLLKRFPSFPWVVADKVQEIN 592
G T+ STS S RP+ +P L+ P+++R R TLL SF V ++ I+
Sbjct: 507 GSPTILSTSFSLARPYPEPALVSPSTERPPRSSFSAALMTLLNIIASFKKVTM-VIENIH 565
Query: 593 KTKQAVIFLXRLKAWSDIP 649
++ + + + +SD+P
Sbjct: 566 LADESSLIILQKIVYSDLP 584
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 652 RCTSL----SVFVLVRVNAQPSSYXRKGXLIIFNKDQ 750
RCTSL SVF L +VN + G L IF+K Q
Sbjct: 226 RCTSLDLTNSVFSLSKVNTDCAILTSSGKLKIFSKAQ 262
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -2
Query: 118 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 41
K+G LP+ SF Y + +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 536 LKRFPSFPWVVAD 574
L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -3
Query: 573 SATTQGKLGNLFNNVSSSLNE 511
SAT+ +L ++F+N+SSS+++
Sbjct: 670 SATSNSQLSSIFSNLSSSISD 690
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +1
Query: 529 HIIEKIPELPLGCSRQSPRDQQDQTGCH 612
H++EK+ E+ + C R ++ CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,658
Number of Sequences: 5004
Number of extensions: 59012
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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