Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_C04
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.36 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    29   1.1  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.4  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   5.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 244 VRVHRANTGRSSNELDRQTTELERR 318
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = +2

Query: 293 DKRLSWNAGEWGCSTWLVSSERLWGPDVVLLN---AAATTAGDYALRARVSNNGSVSWIK 463
           +K+L+     +    WL+S +R WG  + +++     A    +  L  ++ +   + + K
Sbjct: 415 EKKLAKRVKNYRLKDWLISRQRFWGTPIPMVHCETCGAVPVPESELPVKLPDLDKI-YEK 473

Query: 464 RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDXMDFVIDKRIYRY 604
               ++P+S  L+ W     TC    G     +D MD  +D   Y +
Sbjct: 474 G---TSPLS-NLETWMK--TTCPKCHGPATRETDTMDTFVDSSWYYF 514


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 168 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 70
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 422 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 559
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -1

Query: 473 CPSALSRRRSRY*IHGRGERSPRRWLQPRLAVPRQAPTSVPRTPAKCCSPTPLRSNSVVC 294
           CP+  +R RS   ++    +S R+ L P        P+SVP +     SPTPL S   + 
Sbjct: 88  CPALNNRIRS---LNASKSQSGRKSLSPN-------PSSVPSSTETKASPTPLESKPQIV 137

Query: 293 RSNSFE 276
              + E
Sbjct: 138 SDTTTE 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,268
Number of Sequences: 5004
Number of extensions: 59594
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)