Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_C02
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    54   9e-08
U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 25/40 (62%), Positives = 29/40 (72%)
 Frame = +2

Query: 74  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYK 193
           MSGG    AL EEDV K+LA   HLG+ N+NFQM+ YVYK
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYK 40


>U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical
           protein F38B6.7 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 14  SISPPXWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYK 193
           ++S P ++ T+L  + +     GG+D + LNE   TK  A T  +   + +F M  Y ++
Sbjct: 193 NLSMPIFYVTQLSPSIVPNAPKGGIDYVVLNEYIPTKNKANTPEIRTGD-HFAMLPYRFR 251

Query: 194 TTV 202
             V
Sbjct: 252 EPV 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,820
Number of Sequences: 27780
Number of extensions: 256455
Number of successful extensions: 758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)