Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C01
(859 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.8
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 1.8
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 1.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.8
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 30 2.4
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.6
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 5.6
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 7.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 25 7.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 25 7.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 25 7.8
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 28 9.8
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 9.8
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 9.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/88 (27%), Positives = 24/88 (27%), Gaps = 1/88 (1%)
Frame = +3
Query: 432 PXXHPRPLRXXLXPPPXPXXPXXXRXXRXLPSHXXXXXXXPAX-WXXXGVXXXPRRPPXP 608
P P P PPP P P PS P G P PP P
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320
Query: 609 LXXLXXXXGXVDXPPPGTX*XXXPGGXP 692
G PPP PGG P
Sbjct: 321 PPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/104 (26%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Frame = +1
Query: 556 PXGGXXAXXSXPAXPRGPSXXSXXXXAXWIXXPPEPPEXXXRG---XXPXPSXYXGXXPX 726
P G + S PA P P+ A PP PP RG P P P
Sbjct: 544 PIGSGASSYSTPAAPPPPTRVESHGLAP-ARPPPPPPSSGTRGIAPSRPLPQAPNYGTPE 602
Query: 727 XXSXGXXXXWGXPRXXGFRXGPXXSXPGPXPXPLXASXPPPLXL 858
P F P S P P P PPP+ L
Sbjct: 603 NRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPP-----PPPMGL 641
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/104 (26%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Frame = +1
Query: 556 PXGGXXAXXSXPAXPRGPSXXSXXXXAXWIXXPPEPPEXXXRG---XXPXPSXYXGXXPX 726
P G + S PA P P+ A PP PP RG P P P
Sbjct: 370 PIGSGASSYSTPAAPPPPTRVESHGLAP-ARPPPPPPSSGTRGIAPSRPLPQAPNYGTPE 428
Query: 727 XXSXGXXXXWGXPRXXGFRXGPXXSXPGPXPXPLXASXPPPLXL 858
P F P S P P P PPP+ L
Sbjct: 429 NRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPP-----PPPMGL 467
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/88 (27%), Positives = 24/88 (27%), Gaps = 1/88 (1%)
Frame = +3
Query: 432 PXXHPRPLRXXLXPPPXPXXPXXXRXXRXLPSHXXXXXXXPAX-WXXXGVXXXPRRPPXP 608
P P P PPP P P PS P G P PP P
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330
Query: 609 LXXLXXXXGXVDXPPPGTX*XXXPGGXP 692
G PPP PGG P
Sbjct: 331 PPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 801 PAGXPPXX-PPGVXPPXPVP 857
P G PP PPG+ PP PVP
Sbjct: 16 PVGFPPVTAPPGLHPPPPVP 35
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 590 PPXPXAPXXPRGXPGLXGXSXPRN-XLXAXPGGXP 691
PP P P PRG PG G P+N + + P G P
Sbjct: 209 PPGPPGPKGPRGTPGPTG---PKNFYITSGPPGPP 240
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 786 GAXXLPAGXPPXXPPGVXPPXPVP 857
G PA PP PP PP P P
Sbjct: 293 GGYSAPAAAPPPPPPPPPPPAPAP 316
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 786 GAXXLPAGXPPXXPPGVXPPXPVP 857
G PA PP PP PP P P
Sbjct: 293 GGYSAPAAAPPPPPPPPPPPAPAP 316
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 590 PPXPXAPXXPRGXPGLXGXSXPRNXLXAXPGGXP 691
PP P P P G PG G + P PGG P
Sbjct: 162 PPGPPGPEGPNGEPGNKGPAGP-----PGPGGKP 190
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 590 PPXPXAPXXPRGXPGLXGXSXP 655
PP P P P G PG G S P
Sbjct: 260 PPGPPGPIGPPGQPGAPGSSQP 281
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 25.4 bits (53), Expect(2) = 7.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 813 PPXXPPGVXPPXPVP 857
PP PPG PP P P
Sbjct: 760 PPPPPPGGCPPPPPP 774
Score = 21.0 bits (42), Expect(2) = 7.6
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +3
Query: 597 PPXPLXXLXXXXGXVDXPPPGTX*XXXPGGXP 692
PP P L G PPP GG P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 759
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 25.4 bits (53), Expect(2) = 7.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 813 PPXXPPGVXPPXPVP 857
PP PPG PP P P
Sbjct: 760 PPPPPPGGCPPPPPP 774
Score = 21.0 bits (42), Expect(2) = 7.6
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +3
Query: 597 PPXPLXXLXXXXGXVDXPPPGTX*XXXPGGXP 692
PP P L G PPP GG P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 759
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 25.4 bits (53), Expect(2) = 7.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 813 PPXXPPGVXPPXPVP 857
PP PPG PP P P
Sbjct: 343 PPPPPPGGCPPPPPP 357
Score = 21.0 bits (42), Expect(2) = 7.8
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +3
Query: 597 PPXPLXXLXXXXGXVDXPPPGTX*XXXPGGXP 692
PP P L G PPP GG P
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 342
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/51 (27%), Positives = 15/51 (29%)
Frame = +2
Query: 491 PXXXPXXXGSPFXXXXXXXXSXPXXVXXRXXXXPPXPXAPXXPRGXPGLXG 643
P P G+P P PP P P P G PG G
Sbjct: 171 PAGPPGPSGAPGQKGPSGAPGVPGQTGGASLPGPPGPAGPPGPSGQPGSNG 221
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 590 PPXPXAPXXPRGXPGLXGXSXP 655
PP P P G PGL G S P
Sbjct: 146 PPGPDGDSGPEGFPGLQGQSGP 167
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 848 GGGXDAXRGXGXGPGXEXXGPXRXPXXRGKP 756
GGG RG G G G GP P KP
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPKPPAKP 652
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 848 GGGXDAXRGXGXGPGXEXXGPXRXPXXRGKP 756
GGG RG G G G GP P KP
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPKPPAKP 652
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,147,451
Number of Sequences: 27780
Number of extensions: 126962
Number of successful extensions: 1041
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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