Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B23
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.53
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 32 0.70
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938... 29 3.7
09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715 29 3.7
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.7
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 29 4.9
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609... 29 6.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 6.5
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.6
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 362 HQPSAAAPFPCVPTQPFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 198
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 31.9 bits (69), Expect = 0.70
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 474 QETGAVIRYTGRGERSPRRWLQPRLAVPRQASTSVPRTP 358
+ET V GRG RS R L+P LA+ A + +P P
Sbjct: 432 EETPQVFTACGRGPRSTLRILRPGLAISEMARSMLPAEP 470
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 260 VRVHRADTGRSSNELDRQTAELERRGMGLQHLAGVLGTL 376
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>10_06_0175 -
11490280-11491000,11491869-11491947,11493613-11493811,
11494003-11494044
Length = 346
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 386 RPPQAFRGHQPSAAAPFPCVPTQPFV 309
+PPQ G P+ P+P PTQP V
Sbjct: 128 QPPQPSLGWSPNLNLPYPLPPTQPTV 153
>09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715
Length = 462
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = +2
Query: 239 ETC*HS*VRVHRADTGRSSNELDRQTAELERRGMGLQHLAGVLGTLVEA*RGTAKRGCNH 418
E C + V V + D RS L T++ ++ G H A L T +E G R C H
Sbjct: 57 EKCKNVEVNVQQEDQQRSIPLLLYLTSQSDKNGSTPLHFAASLKTSIE---GFTSRLCEH 113
Query: 419 RRGLRSPRPVYL 454
R +SP + L
Sbjct: 114 FRPKQSPTTLLL 125
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 275 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 186
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 418 PAGTTLSAPGVSNNGSRLLELSAWDIXXPISMQLDNWAQRTCRPC 552
PAGT L P V NG L++ A P+ M D++ R C PC
Sbjct: 243 PAGTNLKNPEVDQNG--LIQTLAMCGYLPLMMHNDSF--RKCVPC 283
>07_01_1104 -
10160493-10160599,10160632-10160637,10160930-10160975,
10161053-10161190,10161275-10161679,10163193-10163330,
10163401-10163482,10163596-10163943,10164294-10164655,
10165154-10165209,10166428-10166558,10166564-10166628,
10169191-10169631
Length = 774
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 269 HRADTGRSSNELDRQTAELERRGMGLQHLAGVLGTLVEA*RGTAKRGCNHRRGLRSPRP 445
H+ + R +RQ AEL+R+ +Q A + + +G + +RSP P
Sbjct: 263 HQEEVEREQKRRERQQAELKRQA-SIQKQANFMQHFLRGKKGGNMESLGNHHSMRSPHP 320
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 453 RYTGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSNSAVCRSNSFEDLPVSA 274
R + R RSPRR P R + + R+PA S P+R++S + D+ +A
Sbjct: 220 RGSPRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSRSPADHERRDMSTAA 279
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 147 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 302
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,046,633
Number of Sequences: 37544
Number of extensions: 447611
Number of successful extensions: 1252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -