Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B22
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.4  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.5  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 297 ENRAKRSPTYATPLMSPYNARLESSSTGSSF 205
           EN A+   T +T +  PY ARL S S   +F
Sbjct: 400 ENNAQNGYTVSTEITDPYLARLPSPSLRGTF 430


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 494 AVHLSKNNAGVLRPAQRGQKPRRGAKGQ 577
           A+++S++N      A+RG K RRG KG+
Sbjct: 27  ALNISQDNKTSSSSAKRGAKGRRGTKGK 54


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 615 VPMRTEHLDQAXFCPFAPRRGFC 547
           V +R   + +  F P  PR+GFC
Sbjct: 241 VTLRNPQISRPPFAPLNPRKGFC 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,499
Number of Sequences: 5004
Number of extensions: 68565
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)