Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B22
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF039712-1|AAK21402.2|  239|Caenorhabditis elegans 2 (zwei) ig-d...    28   7.4  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    28   9.7  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    28   9.7  

>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +2

Query: 152 LLSSETTAKGTGLGESAGNEDPVELDSSLAL*GDMRGVA*VGDRFARFSLKNHYFHCFIT 331
           + S  TT+    + +S+  ++   LD   AL G +R VA + DR  R SLKN     F+T
Sbjct: 32  IFSLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLT 87

Query: 332 YSVGRKRCAVDNIGGRTVF 388
           Y+      +  NI  R+ F
Sbjct: 88  YTPVILNASTTNIVTRSKF 106


>AF039712-1|AAK21402.2|  239|Caenorhabditis elegans 2 (zwei)
           ig-domain protein protein7 protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 140 ECPYLLSSETTAKGTGLGESAGNEDPVELDSS 235
           ECP L + E   +    GE  GN D +E D +
Sbjct: 163 ECPVLANPEPMVRWEKNGEPLGNSDSIEYDGN 194


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
            protein 3, isoform b protein.
          Length = 1361

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 151  IGTFXXXXXXXPTLRLLGPKHELHGTKYRSVLPNXTPTQWGXELKXTGV 5
            +G F         L L+GPK EL  T   SVLP   P +     K  GV
Sbjct: 1272 LGVFNGLCVLPVILTLVGPKPELTPTDGSSVLPPPPPLRQQYAEKSGGV 1320


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
            protein 3, isoform a protein.
          Length = 1358

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 151  IGTFXXXXXXXPTLRLLGPKHELHGTKYRSVLPNXTPTQWGXELKXTGV 5
            +G F         L L+GPK EL  T   SVLP   P +     K  GV
Sbjct: 1269 LGVFNGLCVLPVILTLVGPKPELTPTDGSSVLPPPPPLRQQYAEKSGGV 1317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,041,237
Number of Sequences: 27780
Number of extensions: 403102
Number of successful extensions: 1056
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)