Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B21
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    31   0.21 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   6.0  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 105 PNVGGPDMVVRRLYTGVVRSMALYGAPVRCHALTXDDVAAL 227
           PN+GG    +R++  GV+  MA  G PV C     D + A+
Sbjct: 722 PNMGGKSTYIRQV--GVITVMAQIGCPVPCEVADLDIIDAI 760


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 26/98 (26%), Positives = 40/98 (40%)
 Frame = +1

Query: 400 GAAEVRARKLESRRAVFEAWSRRLADPAYGRRTVEAIRPVLLDWVNRPRTSHLPSDAGAH 579
           G+  +RAR+    R+    WS R+  P  G  T     P        P TS    +A   
Sbjct: 239 GSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYP--------PTTSSALPNASGS 290

Query: 580 GTRLFRVATCTSSPGGSRXQXXTIAVAAAKDTXEHTLA 693
            +  F + T  S+  G+      I+ AA K + E+ +A
Sbjct: 291 SSSFFGLPTAVSASAGT--SFSDISPAAPKASLENNIA 326


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 403 AAEVRARKLESRRAVFEAWSRRL 471
           A +V+ +K+E+RR VF+A S ++
Sbjct: 135 ALDVKEKKMENRRLVFDALSTKI 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,811
Number of Sequences: 5004
Number of extensions: 49382
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)