Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B21
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046 32 0.51
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 30 2.7
04_02_0002 + 8412568-8412781,8412915-8413015,8413114-8413185,841... 30 2.7
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 30 2.7
12_01_0909 - 8828921-8829004,8829204-8829249,8829798-8829919,883... 29 3.6
05_04_0064 - 17613070-17614749 29 4.7
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605... 29 4.7
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 29 6.3
10_02_0175 - 6207485-6207898 29 6.3
05_01_0533 + 4594169-4595065,4598375-4598983 29 6.3
07_03_0382 + 17470508-17470807,17471449-17474517 28 8.3
03_01_0070 + 577328-577835,578106-578136,578184-578196 28 8.3
>01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046
Length = 502
Score = 32.3 bits (70), Expect = 0.51
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 45 WRKIWVPVLMAAAGSLSRLLPNVGGPDMVVRRLYTGVVRSMALYGAPVRCHALT 206
WR++W + + LLP+ GP + R + V R +A + P RC LT
Sbjct: 77 WRRVWASTPLVLDDA--DLLPDDDGPQIFWRDVADAVSRVLAAHPGPFRCVRLT 128
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 364 RCDLRSREEPRPGAAEVRARKLESRRAVFEAWSRRLADPAYGRR 495
RCDL RE R A + R + + +R VF + + YG++
Sbjct: 41 RCDLEGREADRRSARDARHARSKGKRLVFVTNNSTKSRKQYGKK 84
>04_02_0002 +
8412568-8412781,8412915-8413015,8413114-8413185,
8413267-8413380,8414248-8414269,8414450-8414598,
8415054-8415203,8415369-8415401,8418268-8418474
Length = 353
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 316 PPWDLEV-EALAADYAWRCD 372
PPWDLE+ +A Y +RCD
Sbjct: 106 PPWDLEIGDAFIIHYTYRCD 125
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 611 PHRPEGADXXLXPLQWLQPRTRXSTRSRYCPLSREXXRSLXAKXYXXH 754
PH EG + L +W QPRTR TR Y P ++ + Y H
Sbjct: 778 PHTEEGYEAYL---RWYQPRTR--TRVTYAPTEQQAHAASARDLYARH 820
>12_01_0909 -
8828921-8829004,8829204-8829249,8829798-8829919,
8830013-8830078,8830520-8830771,8830859-8830939,
8831193-8831294,8831373-8831410,8831497-8831602,
8831694-8831816,8831918-8831994,8833095-8833240,
8833355-8833533
Length = 473
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 371 ISAPGRS-RVPARRKFERGSLNLGVPCSRRGLA-AW 472
+ AP R+ RVP+ ++F RGS GVPC +A AW
Sbjct: 341 LRAPVRAGRVPSWQEFARGSRPSGVPCMSDEVATAW 376
>05_04_0064 - 17613070-17614749
Length = 559
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 537 STEDVSPSERRRCSRDTAVSGRYLHLIARREPTP 638
STE + S RRRC A G +L ++ + P P
Sbjct: 58 STESGAGSHRRRCKTGAASGGSFLRVVGFQVPGP 91
>03_02_0162 +
6053144-6053365,6053474-6053548,6054477-6054623,
6054749-6055300,6055387-6055622,6055914-6056130
Length = 482
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -2
Query: 548 VLGRFTQSKRTGRIASTVRRP*AGSARRRDHASNTARRDSSFRARTSAAPGRGS 387
+L F+QS+ + +TV R S RDH N ARR + A SAA R S
Sbjct: 173 LLKLFSQSQIIEALGATVERVRPVSITHRDHFVNIARR-RALEANKSAAAQRES 225
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 28.7 bits (61), Expect = 6.3
Identities = 26/94 (27%), Positives = 40/94 (42%)
Frame = -1
Query: 468 AARPRLEHGTPRFKLPRSNFRRAGTRLLPGAEITSPSVIRSERLHFQVPGRRPGEHAXXL 289
AA +E G + + RRA T + P E T+PS + + P + P E +
Sbjct: 70 AAADAVECGGMAARSCAQDERRASTAVKPRRERTAPS--QPPSIGPTAPSQPPKE---GV 124
Query: 288 ERDGAVPTNRP*PQSHAADVATLRRRXVSGRGTL 187
E G RP P+ H ++AT + R T+
Sbjct: 125 EGYGLATAARPLPRLHFTNIATAAAPDLRRRATM 158
>10_02_0175 - 6207485-6207898
Length = 137
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 240 RAIAVRXGSWVPHR-LVRGXVRARRDASLGPGSGGA 344
RA A R G W R RG R R DA G G GGA
Sbjct: 54 RAAAARRGEWRRWRQRRRGGGRRRPDAVKGGGGGGA 89
>05_01_0533 + 4594169-4595065,4598375-4598983
Length = 501
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 482 AGSARRRDHASNTARRDSSFRARTSAAPGRGSSL 381
A +ARR D AS A +FRA APG G++L
Sbjct: 183 ARAARRLDQASLGAVMIPAFRAAAGDAPGAGATL 216
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +1
Query: 307 AGTPPWDLEVEALAAD-----YAWRCDLR--SREEPRPGAAEVRARKLESRRAVFEAWSR 465
A PP EALAA+ +A +LR +R GAA A E+R A AW R
Sbjct: 5 AALPPAARSAEALAAEVGGHAHAAADELRGLARRLDAVGAAAAGAEAREARDAGARAWLR 64
Query: 466 RLADPAY 486
+ D Y
Sbjct: 65 EILDALY 71
>03_01_0070 + 577328-577835,578106-578136,578184-578196
Length = 183
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 600 DPKQPCPVSTCVAR--KVRRPRSIHPVQEDRADRLDGPS 490
DP P P++T V +VRR HP+Q R D L S
Sbjct: 48 DPNNPTPLTTTVVTVLRVRRLGPHHPLQIPRPDPLPAAS 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,015,086
Number of Sequences: 37544
Number of extensions: 526660
Number of successful extensions: 2008
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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