Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B21
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    36   0.037
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    36   0.037
U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.        29   3.2  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL032627-2|CAB63353.2|  521|Caenorhabditis elegans Hypothetical ...    29   4.2  
U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical pr...    29   5.6  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    29   5.6  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    29   5.6  
AF040653-12|AAB95023.2|  257|Caenorhabditis elegans Hypothetical...    28   9.8  

>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +2

Query: 254 QGRFVGTAPSRSRXXACSPGRLPGTWKWRRSLRITLGDVISAPGRSRVPARRKFERGSLN 433
           + R  G    RSR  +CS   +  T    R    +  + ++ PGRS +      +   L+
Sbjct: 422 KSRLQGVEEMRSRMGSCSSASMMSTRNQHRIYGSSF-NTLTVPGRSMITPNMSRDVSQLS 480

Query: 434 LGVPCSRRGLAAWRTPPTGDGPS 502
           L  P S+      ++P  GD PS
Sbjct: 481 LCRPTSQMSFCRPKSPMAGDSPS 503


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +2

Query: 254 QGRFVGTAPSRSRXXACSPGRLPGTWKWRRSLRITLGDVISAPGRSRVPARRKFERGSLN 433
           + R  G    RSR  +CS   +  T    R    +  + ++ PGRS +      +   L+
Sbjct: 422 KSRLQGVEEMRSRMGSCSSASMMSTRNQHRIYGSSF-NTLTVPGRSMITPNMSRDVSQLS 480

Query: 434 LGVPCSRRGLAAWRTPPTGDGPS 502
           L  P S+      ++P  GD PS
Sbjct: 481 LCRPTSQMSFCRPKSPMAGDSPS 503


>U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.
          Length = 846

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 361 WRCDLRSREEPRPGAAEVRARKLESRRAVFEAWSRRLA 474
           WRC  RSR  P     EV+ R  E R  +  A S RLA
Sbjct: 774 WRC--RSRSSPSEAEEEVKRRNKEERDRLDAAVSSRLA 809


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 597 PKQPCPVSTCVARKVRRPRSIHPVQEDRADRLDGPSPVGGVRQAARPRLEHGT-PRFKLP 421
           P  P P  +   R+ RRPR++  +  + A     P+P G  R  +  ++   T P  + P
Sbjct: 508 PPPPSPSPSTPGRRGRRPRTLSTMSMEPAAAAVTPAPRGRPRSRSAAKVSENTEPLSEAP 567

Query: 420 RSNFRRAGTR 391
            +  +R   R
Sbjct: 568 SAPVKRGRGR 577


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 597 PKQPCPVSTCVARKVRRPRSIH--PVQEDRADRLDGPSPV 484
           P Q  P S   AR  +  RS H  P Q+ R ++  GP+PV
Sbjct: 105 PSQYTPASVSTARAPQFHRSSHVTPSQQQRIEQAFGPAPV 144


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 597 PKQPCPVSTCVARKVRRPRSIH--PVQEDRADRLDGPSPV 484
           P Q  P S   AR  +  RS H  P Q+ R ++  GP+PV
Sbjct: 105 PSQYTPASVSTARAPQFHRSSHVTPSQQQRIEQAFGPAPV 144


>AL032627-2|CAB63353.2|  521|Caenorhabditis elegans Hypothetical
           protein Y41C4A.2 protein.
          Length = 521

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 42  FWRKIWVPVLMAAAGSLSRLLPNVGGPDMVVRRLYTGVVRSMALYGAPVRCHALTXDDVA 221
           +W+ + V VL+  A  +  + P    P++V  RL TG+   +      V    +T DDVA
Sbjct: 399 YWKSLGVDVLICPAFCIPAV-PEKYLPELVNTRLSTGLFNMLDFPAGIVPAGHVTADDVA 457

Query: 222 AL 227
            L
Sbjct: 458 NL 459


>U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical
           protein T07D1.3 protein.
          Length = 144

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 311 PASTHXXSNETVRYPRTXPDRNRTLRTSQRCDVVXCQGV 195
           P   H  S   VR   + PD  +    S  CD V CQG+
Sbjct: 44  PDICHTSSQYCVRATYSDPDERKKNGYSMGCDKVDCQGI 82


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -1

Query: 480 GVRQAARPRLE--HGTPRFKLPRSNFRRAGTRLLPGAEITSPS 358
           G ++ +RP L    GT RF++PR+N   AG    P +E++S S
Sbjct: 11  GEQKPSRPFLRKGQGTARFRMPRNNKTSAGAP--PTSELSSAS 51


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -1

Query: 480 GVRQAARPRLE--HGTPRFKLPRSNFRRAGTRLLPGAEITSPS 358
           G ++ +RP L    GT RF++PR+N   AG    P +E++S S
Sbjct: 11  GEQKPSRPFLRKGQGTARFRMPRNNKTSAGAP--PTSELSSAS 51


>AF040653-12|AAB95023.2|  257|Caenorhabditis elegans Hypothetical
           protein K05F6.10 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = -1

Query: 480 GVRQAAR-----PRLEHGTPRFKLP---RSNFRRAGTRLLPGAEITSPSVIRSE 343
           G+RQA R     P  +   P    P   ++NF R GTR +   + T+P + +SE
Sbjct: 55  GIRQARRQDESSPSFKKSEPLLSPPTTAKANFGREGTRQVRRQDDTTPGITKSE 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,731,472
Number of Sequences: 27780
Number of extensions: 342950
Number of successful extensions: 962
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)