Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B20
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.080
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   0.98 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    29   0.98 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.0  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   6.9  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   6.9  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    25   9.2  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   9.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 598  SSHPPLRSRLH-QPDHQIPDS--IHQPPPDLHPFPSIP 702
            S  PP+R  +   P  QIPDS  +H PPP + P  ++P
Sbjct: 1352 SLEPPVRPAVPTSPKPQIPDSSNVHAPPPPVQPMNAMP 1389


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 347 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 517
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 518 DVTVEGVNVLATPSSS 565
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 616 RSRLHQPDHQIPDSIHQPPPDLHPFPSIP*TP 711
           RS +   D + P+   + PP L P PS P +P
Sbjct: 353 RSTIRSTDEREPERTSEDPPQLPPSPSSPSSP 384


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
 Frame = +2

Query: 347 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 526
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 527 VEGVNVLATPSSSRITIGGLXLMHQATLPCDLGYI----NPIIKSPIPYTN 667
                V +TP ++        + + +T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
 Frame = +2

Query: 359 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 532
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 533 GVNVLATPSSSRITIGGLXLMHQATLPCDLGYI----NPIIKSPIPYTN 667
              V +TP ++        + + +T      Y      P+  +P+  TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 329  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 442
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 410 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 499
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 609 SPAISATSTRSSNPRFHTPTTPRLTSIS 692
           S  IS +ST   N  FH PT    TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 579 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 445
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 606 PSPAISATSTRSSNPRFHTPTTPRLTSIS 692
           P  ++S+         FHTPT PR T +S
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLS 151


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 594 IRXRPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 475
           I   P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 590 LMHQATLPCDLGYINPIIKSPIPYTNHP 673
           + HQA L C  GY + +    +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,749
Number of Sequences: 5004
Number of extensions: 55808
Number of successful extensions: 219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)