Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B20
(778 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL137724-1|CAB70894.1| 439|Homo sapiens hypothetical protein pr... 32 2.6
AC078834-1|AAS01989.1| 439|Homo sapiens unknown protein. 32 2.6
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 3.5
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 3.5
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 3.5
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 3.5
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 3.5
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 3.5
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 3.5
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 3.5
BC111762-1|AAI11763.1| 496|Homo sapiens UBAP2 protein protein. 31 4.6
AY358682-1|AAQ89045.1| 363|Homo sapiens UBAP2 protein. 31 4.6
AL354989-2|CAM21630.1| 412|Homo sapiens ubiquitin associated pr... 31 4.6
AL354989-1|CAI15298.1| 1119|Homo sapiens ubiquitin associated pr... 31 4.6
AL139113-9|CAM13517.1| 325|Homo sapiens ubiquitin associated pr... 31 4.6
AL139113-6|CAM13516.1| 412|Homo sapiens ubiquitin associated pr... 31 4.6
AL139113-5|CAI39657.1| 1119|Homo sapiens ubiquitin associated pr... 31 4.6
AB040924-1|BAA96015.1| 757|Homo sapiens KIAA1491 protein protein. 31 4.6
AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens ... 31 6.1
>AL137724-1|CAB70894.1| 439|Homo sapiens hypothetical protein
protein.
Length = 439
Score = 31.9 bits (69), Expect = 2.6
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +1
Query: 607 PPLRSRLHQPDHQIPDSIHQPPPDLHP 687
PP HQP HQ P HQPPP HP
Sbjct: 46 PPQHQPPHQPPHQPPPQ-HQPPPQ-HP 70
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +1
Query: 628 HQPDHQIPDSIHQPPPDLHPFPSIP 702
HQP HQ P HQPPP P P P
Sbjct: 49 HQPPHQPP---HQPPPQHQPPPQHP 70
>AC078834-1|AAS01989.1| 439|Homo sapiens unknown protein.
Length = 439
Score = 31.9 bits (69), Expect = 2.6
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +1
Query: 607 PPLRSRLHQPDHQIPDSIHQPPPDLHP 687
PP HQP HQ P HQPPP HP
Sbjct: 46 PPQHQPPHQPPHQPPPQ-HQPPPQ-HP 70
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +1
Query: 628 HQPDHQIPDSIHQPPPDLHPFPSIP 702
HQP HQ P HQPPP P P P
Sbjct: 49 HQPPHQPP---HQPPPQHQPPPQHP 70
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 323 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 484
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 323 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 484
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 323 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 484
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 323 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 484
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 323 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 484
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 323 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 484
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 323 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 484
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 323 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 484
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>BC111762-1|AAI11763.1| 496|Homo sapiens UBAP2 protein protein.
Length = 496
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 559 ILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLHPFPS 696
+LSH ++S P S P+ S+L Q ++ PPP L FPS
Sbjct: 246 VLSHLDFKSQPEPS---PVLSQLSQRQQHQSQAVTVPPPGLESFPS 288
>AY358682-1|AAQ89045.1| 363|Homo sapiens UBAP2 protein.
Length = 363
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 559 ILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLHPFPS 696
+LSH ++S P S P+ S+L Q ++ PPP L FPS
Sbjct: 90 VLSHLDFKSQPEPS---PVLSQLSQRQQHQSQAVTVPPPGLESFPS 132
>AL354989-2|CAM21630.1| 412|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 412
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 559 ILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLHPFPS 696
+LSH ++S P S P+ S+L Q ++ PPP L FPS
Sbjct: 366 VLSHLDFKSQPEPS---PVLSQLSQRQQHQSQAVTVPPPGLESFPS 408
>AL354989-1|CAI15298.1| 1119|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 1119
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 559 ILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLHPFPS 696
+LSH ++S P S P+ S+L Q ++ PPP L FPS
Sbjct: 419 VLSHLDFKSQPEPS---PVLSQLSQRQQHQSQAVTVPPPGLESFPS 461
>AL139113-9|CAM13517.1| 325|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 325
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 559 ILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLHPFPS 696
+LSH ++S P S P+ S+L Q ++ PPP L FPS
Sbjct: 52 VLSHLDFKSQPEPS---PVLSQLSQRQQHQSQAVTVPPPGLESFPS 94
>AL139113-6|CAM13516.1| 412|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 412
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 559 ILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLHPFPS 696
+LSH ++S P S P+ S+L Q ++ PPP L FPS
Sbjct: 366 VLSHLDFKSQPEPS---PVLSQLSQRQQHQSQAVTVPPPGLESFPS 408
>AL139113-5|CAI39657.1| 1119|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 1119
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 559 ILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLHPFPS 696
+LSH ++S P S P+ S+L Q ++ PPP L FPS
Sbjct: 419 VLSHLDFKSQPEPS---PVLSQLSQRQQHQSQAVTVPPPGLESFPS 461
>AB040924-1|BAA96015.1| 757|Homo sapiens KIAA1491 protein protein.
Length = 757
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 559 ILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLHPFPS 696
+LSH ++S P S P+ S+L Q ++ PPP L FPS
Sbjct: 57 VLSHLDFKSQPEPS---PVLSQLSQRQQHQSQAVTVPPPGLESFPS 99
>AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45600 fis, clone BRTHA3020369. ).
Length = 130
Score = 30.7 bits (66), Expect = 6.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 535 SQCAGHPFILSHYYWRSXPYASSHPPLRSRLHQPDHQIPDSIHQPP 672
S C G PF S+ S P++S HP + +H Q P + QPP
Sbjct: 85 SNCIG-PFS-SYLTSVSLPHSSIHPSIHPSIHPSFIQTPSGLSQPP 128
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,739,695
Number of Sequences: 237096
Number of extensions: 2190881
Number of successful extensions: 6162
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6114
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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