Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B17
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.066
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.066
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 637 PPPPPPXXGXXXXFFXXPPPPP 572
           PPPPPP  G        PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 638 PPPPPPXXGGXXXFFFXPPPPPP 570
           PPPPPP  G        PPPPPP
Sbjct: 9   PPPPPPPPGFEPP--SQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 638 PPPPPPXXGGXXXFFFXPPPPPP 570
           PPPPPP  G        PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 637 PPPPPPXXGXXXXFFXXPPPPP 572
           PPPPPP  G        PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 638 PPPPPPXXGGXXXFFFXPPP 579
           PPPPPP        ++ P P
Sbjct: 778 PPPPPPAVSAGGSRYYAPAP 797


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
 Frame = -3

Query: 638 PPPP-------PPXXGGXXXFFFXPPPPPP 570
           PPPP       PP   G       PPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
 Frame = -3

Query: 638 PPPPPPXXGGXXXFFFXP------PPPPP 570
           PPPPPP           P      PPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,013
Number of Sequences: 5004
Number of extensions: 17346
Number of successful extensions: 222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)