Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B13
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0658 - 30942890-30943054,30943159-30943266,30943448-309435...    32   0.47 
07_03_0658 - 20366559-20367562,20367745-20367937                       29   4.4  
02_05_0040 + 25341418-25341810                                         29   4.4  

>01_06_0658 -
           30942890-30943054,30943159-30943266,30943448-30943598,
           30943683-30943780,30943869-30944020,30944298-30944403,
           30944499-30944588,30944668-30944813,30945396-30945695,
           30945953-30946038,30947260-30947996
          Length = 712

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 154 PW-YLLNEVGVDGLTTRKLAERLGVQQPAL 240
           PW YLL+ VGVDG T + L+ R G    A+
Sbjct: 170 PWNYLLSYVGVDGDTVQSLSSRFGASMDAI 199


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 339 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 160
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 159 -PG 154
            PG
Sbjct: 311 HPG 313


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 394 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 296
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,719,066
Number of Sequences: 37544
Number of extensions: 331979
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)