Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B10
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 28 1.4
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 28 1.8
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 7.3
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 7.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 9.6
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 25 9.6
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 9.6
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 9.6
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -2
Query: 423 ADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTG---SSFP 253
A ++ R P NR SN + RRS SP+ P+ + + + S+TG + P
Sbjct: 312 ASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSP 371
Query: 252 ADSPKP 235
+P P
Sbjct: 372 TAAPPP 377
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 548 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 682
Y+C + +S G L SED ++ W K GLI+ F + E+ Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 402 PLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 229
P P N+T + ++ +++++ T+ L S RL +SS SS PA + P
Sbjct: 242 PSPIEEDYNDTKARRITRKGTKKKTVTFDPSLESVPQKRLNASSNVSSNPAKKTRVSP 299
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -1
Query: 700 LYXKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELXLGHLR-YSLTDV-PPQSNS 530
L+ GS G F+ RT LD + + V++L + + + Y+L + PP +
Sbjct: 125 LFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAK 184
Query: 529 PPGSVLE 509
PP SV+E
Sbjct: 185 PPASVIE 191
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 361 SGFSATIARTISHLCYTSHVSLQCQTRVKLNRVFFPR*FSQARSLGCGFAR 209
+ FS + R + YT H L+ Q V R FF + A +L F R
Sbjct: 2068 AAFSRFLHRVSFSVIYTKHNDLRLQETVHSTRAFFEDLDTHADTLTFDFPR 2118
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 665 SPYAY*TSGSSQLLPFCSTRGF 600
SPYA+ T S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 557 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 408
D + LP+ + P + K+ ++F P+HH + + ++ +P +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 138 GYLKRVIVTPAVYPRLLEFLHVDIQST 58
G+++R+ V YP LLE+L++ + S+
Sbjct: 76 GFIERISVILRDYPDLLEYLNIFLPSS 102
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = -2
Query: 417 IIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPK 238
+++ +PLP + ++ V +PT A+ L P +A L SS + +SP+
Sbjct: 598 VLNTSPLPKTPEKDRSLNVT-----PSSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652
Query: 237 PVPLAVVSLD 208
V+LD
Sbjct: 653 REKKNRVTLD 662
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,876
Number of Sequences: 5004
Number of extensions: 68551
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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