Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B10
(811 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 31 0.98
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 30 1.7
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 30 1.7
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 30 1.7
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF022973-8|AAC25801.1| 116|Caenorhabditis elegans Hypothetical ... 29 5.2
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 31.1 bits (67), Expect = 0.98
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Frame = -2
Query: 534 TPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID-RAPLPPN---RVSNETM 367
TPRL + R T T + + SP T A + RAPLPP+ R S +
Sbjct: 290 TPRLTTA--RATTPLATTSRPTTPSPTTPRATTPLATTPLATTRAPLPPSPPPRTSKRPV 347
Query: 366 -KVVVFQRRSRERSPTYATPLMSPYNARLESSSTGS 262
+ R + R PT TP +P R ++T +
Sbjct: 348 TQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTTTAA 383
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/79 (21%), Positives = 32/79 (40%)
Frame = -2
Query: 504 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSP 325
+T+E T S +A P TKHR +++ ++ + +K + R+P
Sbjct: 581 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 636
Query: 324 TYATPLMSPYNARLESSST 268
P+ P + E+ T
Sbjct: 637 ESTVPIGPPVEVKAEAIQT 655
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/79 (21%), Positives = 32/79 (40%)
Frame = -2
Query: 504 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSP 325
+T+E T S +A P TKHR +++ ++ + +K + R+P
Sbjct: 577 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 632
Query: 324 TYATPLMSPYNARLESSST 268
P+ P + E+ T
Sbjct: 633 ESTVPIGPPVEVKAEAIQT 651
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/90 (24%), Positives = 37/90 (41%)
Frame = -2
Query: 486 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPL 307
T+ + TSP T+GT APA++ P N S+ T S +PT P+
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 681
Query: 306 MSPYNARLESSSTGSSFPADSPKPVPLAVV 217
+ S++T ++ + + P V
Sbjct: 682 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 711
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/90 (24%), Positives = 37/90 (41%)
Frame = -2
Query: 486 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPL 307
T+ + TSP T+GT APA++ P N S+ T S +PT P+
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 737
Query: 306 MSPYNARLESSSTGSSFPADSPKPVPLAVV 217
+ S++T ++ + + P V
Sbjct: 738 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 767
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/68 (27%), Positives = 25/68 (36%)
Frame = -2
Query: 444 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTG 265
G P I + PL +T +R+ +ER P Y P P R+E
Sbjct: 349 GEMTETPRRTITKTPLKTVNAKAKTSPTPPVERQKKERKPLYVAP---PAKERVEKEKKI 405
Query: 264 SSFPADSP 241
S P SP
Sbjct: 406 PSKPVVSP 413
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/68 (27%), Positives = 25/68 (36%)
Frame = -2
Query: 444 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTG 265
G P I + PL +T +R+ +ER P Y P P R+E
Sbjct: 417 GEMTETPRRTITKTPLKTVNAKAKTSPTPPVERQKKERKPLYVAP---PAKERVEKEKKI 473
Query: 264 SSFPADSP 241
S P SP
Sbjct: 474 PSKPVVSP 481
>AF022973-8|AAC25801.1| 116|Caenorhabditis elegans Hypothetical
protein F25G6.8 protein.
Length = 116
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 366 KVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSF 256
K+ F R S+ R P M PY+ R ++ GS+F
Sbjct: 16 KLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMPKGSTF 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,872,378
Number of Sequences: 27780
Number of extensions: 399768
Number of successful extensions: 1112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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