Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B09
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 2.0
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882... 29 3.4
09_03_0188 + 13266080-13266329,13268124-13268201,13268274-132683... 29 4.5
02_01_0054 - 404464-405152,406087-406618 29 4.5
08_02_0813 + 21459776-21461128 29 6.0
07_01_0479 + 3606663-3607448 28 7.9
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 28 7.9
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.9
03_02_0111 + 5688649-5688942 28 7.9
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 7.9
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 400 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 552
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 431 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSNSVVCRSNS 282
T + S GGCS + PP AFRG+ + P+ + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>07_03_1400 +
26287124-26287298,26287925-26288007,26288141-26288270,
26288369-26288442,26288797-26288883,26288976-26289100,
26289232-26289292,26289606-26289683,26289785-26289890,
26289978-26290123,26290264-26290380
Length = 393
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 486 ISMQLDNWPNDMQTCTFKFGSRMHNSDEMDS 578
++++ W ND+++C F+ SR +S+ M+S
Sbjct: 83 VNLEGGGWCNDVKSCVFRKSSRRGSSNHMES 113
>09_03_0188 +
13266080-13266329,13268124-13268201,13268274-13268374,
13268474-13268566,13268648-13268719,13268808-13268930,
13269143-13269412,13271154-13271204,13271325-13271513,
13271613-13271777
Length = 463
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +3
Query: 372 DVVLLNAAATTAGDYALRARVSNNGSVSW-IKRLDISTPISMQLDNWPNDMQTCTFKFGS 548
DV LLN A G++ V + + SW +++ D+ ++ P + G
Sbjct: 25 DVHLLNNLAAHGGEFQREPWVEKDDAASWTVEKDDVPLVNNIVAHGDPEGSSNSLARSGG 84
Query: 549 RMHNSDEMDSVIXQKNIQYV 608
+ N E + Q N +Y+
Sbjct: 85 HLANVHEGAGMFYQPNFKYI 104
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -2
Query: 352 EDISQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 194
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 193 GVGGGVPIVRCEERVDHEG 137
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 315 QGEWGCSTWLMSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 494
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 495 QL 500
+L
Sbjct: 289 EL 290
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -1
Query: 815 PXXPXPPPXXXXXXPPPXNXGXXXPXGXXXGAXPGXHXXHXXXRXPPXXRXWXXPP 648
P P PPP PPP P G G PG PP R PP
Sbjct: 198 PGGPPPPPGPFMRGPPPMGPPQVRP-GMPGGPPPGMR----PGMPPPPFRPGMPPP 248
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 28.3 bits (60), Expect = 7.9
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +2
Query: 92 CAIASAAECENATSLSLM--IDSLL-ATYDRDSPPDSKIVVNLTLHLRHANIRESES--T 256
CA+ AEC+ +TS SL +D+L A YD D D L +R++ I + + T
Sbjct: 50 CAVLRDAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRNMLT 109
Query: 257 VRIQADLQMNWIDKRL---SWNAGGVGL-QHLADV 349
+ ++ + K+L + N GL +H+ DV
Sbjct: 110 YPFKLSQKIKEVRKKLDEIAANRAQFGLTEHVIDV 144
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 79 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 219
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 301 TELERRGSGAAALG*CPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 474
T L + AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 368 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 282
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,957,622
Number of Sequences: 37544
Number of extensions: 511710
Number of successful extensions: 1765
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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