Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B07
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434...    29   5.0  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    29   5.0  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   5.0  
08_02_0415 + 16898549-16898644,16899406-16899678,16899916-168999...    29   6.7  
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    28   8.8  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    28   8.8  

>08_01_0500 +
           4338111-4338195,4339910-4340042,4340116-4340187,
           4340524-4340587,4341383-4341459,4341586-4341657,
           4341741-4341853,4341995-4342126,4342204-4342545,
           4342628-4343022,4343293-4343603,4343967-4344066
          Length = 631

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 686 CGXGXXEXPXXXXXETPPPXXXPPXPXEAPXGXXXGXARSGG 561
           CG G  +        +PPP   PP P ++P       A +GG
Sbjct: 176 CGPGTTKPCPGAPPFSPPPPYNPPTPVQSPGSSSSTGAIAGG 217


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 376 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 212
           H P AAA  P VP++    P  L +     GG GL   S S +  G  + D G+ G
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 30/111 (27%), Positives = 31/111 (27%)
 Frame = -2

Query: 785 PSKXXXPPXPPGXXGGXGXXGXARXXXQXRTRGCGXGXXEXPXXXXXETPPPXXXPPXPX 606
           P     PP PP      G              G G G    P        P    PP P 
Sbjct: 282 PPPPAPPPLPPSHHHHHGHHPPPPHPLPPGA-GAGAGTGAPPPPPAHPAAPA---PPPPA 337

Query: 605 EAPXGXXXGXARSGGXPLXXXAGEGRXXPGXPXXXRPPPAGXXXXXAGXGG 453
            +P     G   SG  P    A      P  P    PPP G     AG GG
Sbjct: 338 PSPSAAGAG---SGPPPPPPPAAPAAPRPPGPGPGPPPPPG----AAGRGG 381


>08_02_0415 +
           16898549-16898644,16899406-16899678,16899916-16899996,
           16900094-16900369,16900414-16900932
          Length = 414

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 127 CASAAECENTTSLSLMIDSLLATYDRESPPVLQNRSQPDP 246
           C  A + ENTT  S    S ++  ++E+PP+L+   +  P
Sbjct: 250 CVHARKPENTTKDSAGGSSFISEENKENPPLLEGNKKKAP 289


>07_03_1546 +
           27602598-27602917,27602995-27603052,27603130-27603252,
           27603896-27603992,27604095-27604131,27604244-27604349,
           27604547-27604604,27604705-27604802,27604911-27605030,
           27605622-27605667,27606336-27606522,27606747-27607263,
           27607361-27607453,27608101-27608286,27608364-27608574,
           27609263-27609387,27609518-27609664,27610114-27610236,
           27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 279 SPPCGYWQIFK*IGSTND*VGTQGNGAAALGWCPXNACXGLT 404
           SP    W + K I    + VG    G  A+ WCP ++   LT
Sbjct: 243 SPSLRVWDVRKTISPVREFVG-HSKGVIAMSWCPYDSSYLLT 283


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 683 GXGXXEXPXXXXXETPPPXXXPPXPXEAPXG 591
           G G    P       PPP   PP P  AP G
Sbjct: 260 GSGGPPRPPPPQVPPPPPQAPPPPPPNAPMG 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,788,683
Number of Sequences: 37544
Number of extensions: 425263
Number of successful extensions: 1488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)