Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B07
(900 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.31
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.31
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.31
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.31
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.31
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.31
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.31
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.31
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 26 0.41
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 25 0.94
X72575-1|CAA51167.1| 168|Apis mellifera Apidaecin precursor pro... 22 8.8
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 8.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSXRLXRPDV 406
++ E + A L++ W+D L N E+ G ++ +L +PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSXRLXRPDV 406
++ E + A L++ W+D L N E+ G ++ +L +PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSXRLXRPDV 406
++ E + A L++ W+D L N E+ G ++ +L +PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSXRLXRPDV 406
++ E + A L++ W+D L N E+ G ++ +L +PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSXRLXRPDV 406
++ E + A L++ W+D L N E+ G ++ +L +PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSXRLXRPDV 406
++ E + A L++ W+D L N E+ G ++ +L +PD+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 73
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSXRLXRPDV 406
++ E + A L++ W+D L N E+ G ++ +L +PD+
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 141
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSXRLXRPDV 406
++ E + A L++ W+D L N E+ G ++ +L +PD+
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDI 141
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 26.2 bits (55), Expect = 0.41
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -3
Query: 838 PGRXAKAP-RGAPXTPXXXPRXGXPPXTXP 752
P + +AP RG+P P P G PP P
Sbjct: 27 PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56
Score = 21.8 bits (44), Expect = 8.8
Identities = 10/31 (32%), Positives = 11/31 (35%)
Frame = +1
Query: 676 PXPHPRVRXXSXXRAXPXXPXPPXHPGGXGG 768
P P P + R P P PGG G
Sbjct: 23 PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53
Score = 21.8 bits (44), Expect = 8.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 370 PSAAAPFPCVPTQS 329
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 25.0 bits (52), Expect = 0.94
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 266 IRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWLVSSXRLXRPD 403
I E + T + + +W+D+RL+ G+ + + R+ +PD
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPD 89
>X72575-1|CAA51167.1| 168|Apis mellifera Apidaecin precursor
protein.
Length = 168
Score = 21.8 bits (44), Expect = 8.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 682 PHPRVRXXSXXRAXPXXPXP 741
PHPR+R + +A P P
Sbjct: 56 PHPRLRREAEPKAEPGNNRP 75
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.8 bits (44), Expect = 8.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 718 AXPXXPXPPXHPGG 759
A P P PP PGG
Sbjct: 391 ATPCTPSPPRGPGG 404
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,007
Number of Sequences: 438
Number of extensions: 3411
Number of successful extensions: 36
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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