Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_B06
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.084
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.19 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.45 
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   7.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.084
 Identities = 19/59 (32%), Positives = 22/59 (37%)
 Frame = +1

Query: 397 KGGPPPXXNXXGGVIFSPPPXKXXPPPPGGGFXXPXKKXFXPPPXXXGGGXXXXXPPPP 573
           K  PPP       ++ +P P     PPP      P      PPP   G G     PPPP
Sbjct: 730 KSPPPPPPAV---IVPTPAPAPIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.79
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +1

Query: 400 GGPPPXXNXXGGVIFSPPPXKXXPPPPGGGFXXPXKKXFXPPP 528
           GGPPP     G     PPP    PPPP         + + P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPP----PPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 445 SPPPXKXXPPPPGGGFXXPXKKXFXPPP 528
           S PP    PPPP  GF  P +    PPP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 400 GGPPPXXNXXGGVIFSPPPXKXXPPPPG 483
           G PPP     G   F PP     PPPPG
Sbjct: 7   GNPPPPPPPPG---FEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
 Frame = +1

Query: 376 PXXXKXKKGGPPPXXNXXGGVIFSPPPXKXXPPP---PGGGFXXPXKKXFXPPPXXXGGG 546
           P     +  G PP  N        PPP    PPP     G    P +    PPP      
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPP----PPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369

Query: 547 XXXXXPPPP 573
                 PPP
Sbjct: 370 PSTGRQPPP 378


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 87  ANQFGDPNFFGPVGPN 40
           AN +G+PN+ GP  PN
Sbjct: 90  ANSYGNPNYSGPQLPN 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,718
Number of Sequences: 5004
Number of extensions: 30447
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)