Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B05
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 294 6e-80
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 289 2e-78
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.8
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.8
06_03_0543 + 21967787-21970261 29 5.8
05_01_0087 + 574623-574687,574797-574871,574987-575101 29 5.8
04_01_0377 - 4970034-4970687 28 7.7
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 294 bits (721), Expect = 6e-80
Identities = 134/224 (59%), Positives = 171/224 (76%)
Frame = +3
Query: 51 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVVNLRRTWE 230
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG +++NL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 231 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 410
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 411 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 590
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 591 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 722
LLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 289 bits (708), Expect = 2e-78
Identities = 133/216 (61%), Positives = 167/216 (77%)
Frame = +3
Query: 84 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVVNLRRTWEKLVLAARAVVA 263
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG +++NL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 264 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 443
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 444 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 623
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 624 VLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVV 731
+ +WDV+VDLFFYRDPEE++ EQ+ +E A+V
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAK--EQEEEEAALV 225
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 151 TFSAPRWVVAASILVTSSSLRASTSNP 71
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 329 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 436
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 579 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 668
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>05_01_0087 + 574623-574687,574797-574871,574987-575101
Length = 84
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 203 CGQLASYLGKTCSGCSCC 256
CG G +CSGCSCC
Sbjct: 64 CGCNTCKCGTSCSGCSCC 81
>04_01_0377 - 4970034-4970687
Length = 217
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 104 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*--WYPCGQLASYLGKTCSGCSCCRSHR 268
C C GR +G+LC C W CG + + G C +CC R
Sbjct: 96 CQNGPCRADIKCGRNA---NGELCPNNMCCSQWGYCGLGSEFCGNGCQSGACCPEKR 149
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 158 PDGDLCLQTTC*WYPCGQLASYLGKTCSGCSCCRSH 265
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,403,643
Number of Sequences: 37544
Number of extensions: 571484
Number of successful extensions: 1533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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