Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B03
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 30 2.5
07_03_1747 + 29188568-29188715,29188793-29189541 29 3.3
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.3
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 29 3.3
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 29 5.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 7.7
10_08_0862 - 21143540-21143968 28 7.7
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575... 28 7.7
08_02_0813 + 21459776-21461128 28 7.7
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 28 7.7
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 7.7
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 7.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.7
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 7.7
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +2
Query: 635 KVGP---PXGNVPDVFPXXAPRXXPXXGRAPRSPXGAPXXXPRPXAXXPXXRXXHPHPG 802
K GP P + P P P+ P G P+ P P P+P P + P PG
Sbjct: 158 KPGPKPKPKPSPPKPKPGPKPKP-PKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPG 215
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 364 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSAVLG 516
PPP TT++ V L TA + S + QF+C+ TTC + S ++ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 395 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 246
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 620 PXTVAKVGPPXGNVPDVFPXXAPRXXPXXGRAPRSPXGAP 739
P + PP P P APR P RAP++P AP
Sbjct: 99 PPQAPAMTPPQAPAPT--PPQAPRPAPSKSRAPQAPPPAP 136
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 687 PGXXPXXAGXPVXPGVXPGXXPARXLXXPPXAXXTPT 797
P P G P+ PGV P PA + P A PT
Sbjct: 95 PLGVPQVPGAPLMPGVRPPILPAPGIPGYPGAPNVPT 131
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 208 VRVHRADTGRSSNELDRQTTELERRG 285
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>10_08_0862 - 21143540-21143968
Length = 142
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 707 GRAPRSPXGAPXXXPRPXAXXPXXRXXHPHPG 802
G AP P GAP P P P H H G
Sbjct: 23 GCAPYCPGGAPPVIPTPPVVVPTPPAHHHHGG 54
>10_02_0139 +
5753426-5754841,5755566-5755655,5756011-5756379,
5756796-5756982,5757567-5757631
Length = 708
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = +2
Query: 638 VGPPXGNVPDVFPXXAPRXXPXXGRAPRSPXGAPXXXPRPXAXXPXXRXXHP 793
V P V FP +P+ G A SP P P+P P R P
Sbjct: 79 VDPAVAAVGPAFPSASPQLQHGGGFAWPSPASNPQPQPQPQLRFPDPRLAQP 130
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 279 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 458
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 459 QL 464
+L
Sbjct: 289 EL 290
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +1
Query: 145 PPVLQNRSQPDP----AFETCQHS*VRVHRADTGRSSNELDRQTTELERRGNGAAALGW 309
P +L R P+ A C + +R HR + RS R++ L RR LGW
Sbjct: 41 PGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRRCRRRSPRLWRRSGSGFLLGW 99
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 384 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 244
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 332 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 246
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 276 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 455
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 456 MQLDN 470
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,783,084
Number of Sequences: 37544
Number of extensions: 512352
Number of successful extensions: 1579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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