Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B01
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 32 0.67
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 1.2
03_02_0111 + 5688649-5688942 31 1.5
07_03_0698 - 20765305-20768526 29 3.6
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.6
04_04_1383 - 33144047-33144603,33145554-33147129 29 4.7
04_04_1125 + 31085106-31085714 29 6.2
02_05_0686 - 30900748-30902167,30903442-30904742 29 6.2
02_01_0054 - 404464-405152,406087-406618 29 6.2
10_01_0271 - 2881059-2881409 28 8.3
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 28 8.3
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.3
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 31.9 bits (69), Expect = 0.67
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 465 PGXGAVTPYTGAESVVPGGGCXRV*QYHVRPPQAFRGHQPSAAAPLALRSNSVVCRSNS 289
P + P T + S GGC + PP AFRG+ + P+ + V CR+ S
Sbjct: 50 PDWPSPNPVTASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/80 (28%), Positives = 31/80 (38%)
Frame = +2
Query: 113 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 292
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 293 LDRQTTELERRASGAAALGW 352
R++ L RR+ LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>03_02_0111 + 5688649-5688942
Length = 97
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 308 TELERRASGAAALGWCPRNACGGLTWYC*TRXQPPPGTTLSAPVYGVTAPXPGXSAWT 481
T L A+ AAA G P G + + PPP L+ P+Y V AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 385 VLLNAGATTAGDYALRP 435
++ N G+TTAGDY LRP
Sbjct: 47 IVANKGSTTAGDYQLRP 63
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = -3
Query: 433 GGERSPRRWLXPRLAVPRQASTSVPRTPA---KCCSP---TRPAFQLSRLSIQFI*RSAC 272
G RSP R + + PRQ+STS P P+ KC P + + L ++Q + R +
Sbjct: 458 GSRRSPLRRMLDPILKPRQSSTSGPIQPSFVPKCHLPGHIDKQSLSLGGSALQNVQRRSV 517
Query: 271 IRTVDSDSR 245
V+S+ R
Sbjct: 518 DSVVNSNCR 526
>04_04_1383 - 33144047-33144603,33145554-33147129
Length = 710
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 677 PAXPXXQGXSPPRXXLGGGXXSXGSXPXLRGLXRAPXXAPPEP 805
PA P Q PP +GGG S + P RAP A P P
Sbjct: 32 PAVPPVQAVRPPPAAVGGGSHSQPTFP-----PRAPVRAVPPP 69
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Frame = +2
Query: 338 AALGWCPRNACGGLTWY---C*TRXQPPPGTTLSAPVYGVTAPXPGXSAWTLAXQFXCSX 508
AAL + A TW C T PPP P P + WT
Sbjct: 14 AALALSAQLAPAAATWCGSNCPTTKPPPPPCQPPPPTPTPATPTTPPTPWTPPPATPTPP 73
Query: 509 TIGPSDXTPARPP 547
T P TPA PP
Sbjct: 74 TPTPWTPTPATPP 86
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +2
Query: 632 PXXPXLXPXXLPX-GXPAXPXXQGXSPPRXXLGGGXXSXGSXPXLRGLXRAPXXAPPEP 805
P P P P G P P +G SPP GG P +G P AP P
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.7 bits (61), Expect = 6.2
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Frame = -2
Query: 359 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 201
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 200 GVGGGVPIVRCEERVDHEGQ*CCVFAFCRTSYSTSEEKXVTRI 72
G GGG R RV EG Y +E V RI
Sbjct: 320 GAGGGNLTARLLPRVRTEGVDGLADRRLGDDYDAAEAGDVARI 362
>10_01_0271 - 2881059-2881409
Length = 116
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 433 GGERSPRRWLXPRLAVPRQASTSV 362
GG SPRRWL PR +S +V
Sbjct: 75 GGGGSPRRWLPSATTAPRVSSVTV 98
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Frame = +3
Query: 219 TLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVL-----GTLVEA*R 383
+LH + ++E TV ++ D W A R+GL AG + G +E
Sbjct: 211 SLHRYPEALADAERTVALRPD----WAKGCSRLGAARLGLGDAAGAVAAYEKGLALEPSN 266
Query: 384 GTAKRGXNHRRGLRSPPP 437
G K G H R R P P
Sbjct: 267 GALKDGLAHARQARRPAP 284
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 86 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 226
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,622,774
Number of Sequences: 37544
Number of extensions: 458457
Number of successful extensions: 1553
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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