Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_B01
(855 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 8e-04
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 34 0.001
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.004
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.010
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 29 0.072
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.095
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 28 0.095
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.13
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.22
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.38
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.38
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.38
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.67
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.67
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.7
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 4.7
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 4.7
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 4e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 123 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 287
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 288 MNWIDKRLSWNA 323
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 35.1 bits (77), Expect = 8e-04
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 129 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 296
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 297 IDKRLSWNAGR 329
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1
Query: 352 VSSERLWRPDVVLLNAGATTAGDYALRPR---VWSNGSXSWXKRLDISTPISMQXDNWPQ 522
V S+ +W PD+ + N+G T + P V+S+GS S + + +WP
Sbjct: 119 VKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPY 178
Query: 523 RLHTCTXPXG 552
H C G
Sbjct: 179 DTHRCRINFG 188
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 32.7 bits (71), Expect = 0.004
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 352 VSSERLWRPDVVLL-NAGATTAGDYALRPRVWSNGSXSWXKRLDISTPISMQXDNWPQRL 528
V S+ +WRPD+VL NA + V+ +G W + S+ + +P +
Sbjct: 105 VPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDV 164
Query: 529 HTCTXPXG 552
TC G
Sbjct: 165 QTCVLKLG 172
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.5 bits (68), Expect = 0.010
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +1
Query: 352 VSSERLWRPDVVLL-NAGATTAGDYALRPRVWSNGSXSWXKRLDISTPISMQXDNWPQRL 528
V S+ +WRPD+VL NA A + ++ G W + + + +P
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDE 164
Query: 529 HTCTXPXG 552
TC G
Sbjct: 165 QTCVLKFG 172
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 28.7 bits (61), Expect = 0.072
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 361 ERLWRPDVVLL-NAGATTAGDYALRPRVWSNGSXSWXKRLDISTPISMQXDNWPQRLHTC 537
+++W+PD+VL NA Y ++ NG W + ++ +P TC
Sbjct: 106 DKVWKPDIVLFNNADGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTC 165
Query: 538 TXPXG 552
G
Sbjct: 166 IMKFG 170
Score = 23.4 bits (48), Expect = 2.7
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 201 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.3 bits (60), Expect = 0.095
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 361 ERLWRPDVVLLNAGATTAGDYALRP---RVWSNGSXSWXKRLDISTPISMQXDNWPQRLH 531
ER+WRPD N + + R+ +G + RL I M+ N+P
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 532 TC 537
+C
Sbjct: 175 SC 176
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 28.3 bits (60), Expect = 0.095
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +1
Query: 352 VSSERLWRPDVVLL-NAGATTAGDYALRPRVWSNGSXSWXKRLDISTPISMQXDNWPQRL 528
V S+ +WRPD+VL NA A + + G W + + + +P
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDE 160
Query: 529 HTCTXPXG 552
TC G
Sbjct: 161 QTCVMKFG 168
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 150 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 308
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 309 LSWN 320
L +N
Sbjct: 95 LRFN 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.22
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 334 GCSTWLVSSERLWRPDVVLLN 396
G T V SE +W PD+VL N
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYN 111
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 240 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 352 VSSERLWRPDVVLLNA 399
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 240 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 352 VSSERLWRPDVVLLNA 399
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 240 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 352 VSSERLWRPDVVLLNA 399
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 240 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 352 VSSERLWRPDVVLLNA 399
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 240 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +1
Query: 352 VSSERLWRPDVVLLNA 399
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 240 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.89
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 352 VSSERLWRPDVVLLN-AGATTAGDYALRPRVWSNGS 456
++ +LW+PD+++ N A G Y V NGS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 240 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 25.4 bits (53), Expect = 0.67
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 352 VSSERLWRPDVVLLN-AGATTAGDYALRPRVWSNGS 456
++ +LW+PD+++ N A G Y V NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 240 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG 335
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 25.4 bits (53), Expect = 0.67
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 352 VSSERLWRPDVVLLN-AGATTAGDYALRPRVWSNGS 456
++ +LW+PD+++ N A G Y V NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.2 bits (55), Expect = 0.38
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 328 EWGCSTWL-VSSERLWRPDVVLLN 396
E+G T L V SE +W PD+VL N
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYN 111
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.67
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 352 VSSERLWRPDVVLLN-AGATTAGDYALRPRVWSNGS 456
+ RLW+PDV++ N A G Y V +NG+
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.67
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 334 GCSTWLVSSERLWRPDVVLLN 396
G V SE +W PD+VL N
Sbjct: 104 GVEMLYVPSENIWLPDIVLYN 124
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 352 VSSERLWRPDVVLLN 396
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 146 GQ*CCVFAFCRTSYSTSEEKXVTRII 69
G+ CC F T Y + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 415 GDYALRPRVWSNGSXSWXKRLD 480
GDY + WS+ W K+L+
Sbjct: 382 GDYVVLETEWSSFINPWTKKLE 403
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 415 GDYALRPRVWSNGSXSWXKRLD 480
GDY + WS+ W K+L+
Sbjct: 88 GDYVVLETEWSSFINPWTKKLE 109
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,585
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 39
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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