Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_A17
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.83 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.83 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.83 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 428 VXREXPLDXV*KTPGXNPPQRGKPGGXANXKTT 330
           V R+ P+  V   PG NP  + + GG     TT
Sbjct: 387 VGRKRPMHNVVYRPGENPVTQKREGGPPTGATT 419


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 428 VXREXPLDXV*KTPGXNPPQRGKPGGXANXKTT 330
           V R+ P+  V   PG NP  + + GG     TT
Sbjct: 407 VGRKRPMHNVVYRPGENPVTQKREGGPPTGATT 439


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 428 VXREXPLDXV*KTPGXNPPQRGKPGGXANXKTT 330
           V R+ P+  V   PG NP  + + GG     TT
Sbjct: 356 VGRKRPMHNVVYRPGENPVTQKREGGPPTGATT 388


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 614  GXKKKXXXXGVXXPPPPPP 670
            G  +     G   PPPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPPP 1864


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 107 NEEDVTKMLAATTH-LGAENVNFQMXTYVYKRRADGTHGDQ 226
           NE    K  A +++ LG+ + +FQ  +  + R  D  H D+
Sbjct: 202 NETKTCKKYAISSNSLGSRSRSFQRTSSCHSRYEDSRHEDR 242


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 651  PPPPPPXXXXG 683
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,102
Number of Sequences: 438
Number of extensions: 5209
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)