Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_A14
(857 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 35 0.001
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 33 0.003
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.004
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.004
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.014
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.014
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.018
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.018
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.018
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.018
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.018
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.018
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 31 0.018
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 30 0.031
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 30 0.031
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 30 0.031
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 29 0.072
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 28 0.13
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 27 0.29
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 26 0.39
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 25 0.89
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 25 0.89
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 25 1.2
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 2.7
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 39.1 bits (87), Expect = 5e-05
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Frame = +3
Query: 33 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 191
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 192 VRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
+ L+ W D + + G + V SE +W PD+VL
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVL 109
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 37.9 bits (84), Expect = 1e-04
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Frame = +3
Query: 21 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 179
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 180 SESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
T + ++ W D +L+ G T V SE +W PD+VL
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVL 109
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 34.7 bits (76), Expect = 0.001
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +3
Query: 51 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 209
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 210 LQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
++ +W D +L+ + G V S+ +WRPD+VL
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 33.5 bits (73), Expect = 0.003
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +3
Query: 78 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLE 242
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L+
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 243 XGTQGEWGCSTWLVSSERLWRPDVVL 320
+ G V SE +W PD+VL
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVL 122
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 32.7 bits (71), Expect = 0.004
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 78 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLE 242
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 243 XGTQGEWGCSTWLVSSERLWRPDVVL 320
+ G V S+ +WRPD+VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 32.7 bits (71), Expect = 0.004
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 78 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLE 242
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 243 XGTQGEWGCSTWLVSSERLWRPDVVL 320
+ G V S+ +WRPD+VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.014
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +3
Query: 78 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLE 242
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L+
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 243 XGTQGEWGCSTWLVSSERLWRPDVVL 320
G ++ +LW+PD+++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILM 143
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.014
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +3
Query: 78 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLE 242
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L+
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 243 XGTQGEWGCSTWLVSSERLWRPDVVL 320
G ++ +LW+PD+++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILM 143
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.018
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
++ E + A L++ W+D L+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.018
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
++ E + A L++ W+D L+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.018
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
++ E + A L++ W+D L+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.018
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
++ E + A L++ W+D L+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.018
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
++ E + A L++ W+D L+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.018
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
++ E + A L++ W+D L+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 30.7 bits (66), Expect = 0.018
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 129 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWR 305
K+ VN L ++ N+ E ++ L+ W D +L+ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 306 PDVVL 320
PD+VL
Sbjct: 111 PDIVL 115
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 29.9 bits (64), Expect = 0.031
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +3
Query: 54 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 218
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 219 NWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVLL 323
W D RL + ++ + + +W PD +
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFI 150
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 29.9 bits (64), Expect = 0.031
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +3
Query: 54 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 218
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 219 NWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVLL 323
W D RL + ++ + + +W PD +
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFI 150
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 29.9 bits (64), Expect = 0.031
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +3
Query: 54 ENATSLSLMIDSLLAT--YDRE--SPPDSKIVVNLT-LHLRHANIRESESTVRILADLQM 218
E+ S ++D+LL + YD+ P + VN++ L L A+ ES + LQ
Sbjct: 56 EDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQ 115
Query: 219 NWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVLL 323
W D RL + ++ + + +W PD +
Sbjct: 116 QWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFI 150
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 28.7 bits (61), Expect = 0.072
Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Frame = +3
Query: 9 YXFLLTCAIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NI 173
+ + A+A++ + +++ LL TY+ E P ++ +V++ L L ++
Sbjct: 4 WTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDV 63
Query: 174 RESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDVVL 320
E + L++ W D + G + RLW+PDV++
Sbjct: 64 DEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLM 112
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 27.9 bits (59), Expect = 0.13
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Frame = +3
Query: 6 GYXFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDS--KIVVNLTLHL--RHANI 173
G+ +LL C ++ T+L + L YD P S +I N+T+ L +
Sbjct: 28 GFSYLLNCK-----NYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEF 82
Query: 174 RESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPDV 314
+ S + + + + + W D L G + V S+ +W PD+
Sbjct: 83 DDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIWVPDI 129
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +3
Query: 132 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRPD 311
+V L+LH ++ E + + W D L+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 312 VVL 320
+L
Sbjct: 92 TIL 94
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 26.2 bits (55), Expect = 0.39
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = +3
Query: 57 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 224
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 225 IDKRLEXGTQGEWGCSTWLVSSE---RLWRPD 311
D RL + G T V SE +W PD
Sbjct: 68 TDPRL--AFKKRTGVETLSVGSEFIKNIWVPD 97
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 25.0 bits (52), Expect = 0.89
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 132 IVVNLT-LHLRHANIRESESTVRILADLQMNWIDKRLEXGTQGEWGCSTWLVSSERLWRP 308
+ VN++ L L A+ ES + LQ W D RL + ++ + + +W P
Sbjct: 137 LTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLP 196
Query: 309 DVVLL 323
D +
Sbjct: 197 DTYFI 201
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.0 bits (52), Expect = 0.89
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +3
Query: 57 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 224
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 225 IDKRLEXGTQGEWGCSTWLVSSE---RLWRPD 311
D RL + G T V SE +W PD
Sbjct: 68 TDPRL--AFKKRTGVETLSVGSEFIKNIWVPD 97
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 24.6 bits (51), Expect = 1.2
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = +3
Query: 66 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 230
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 231 KRLEX-GTQGEWGCSTWLVSSERLWRPD 311
RL G S ++ ER+WRPD
Sbjct: 96 SRLSFLGPIKSLSLSIKML--ERIWRPD 121
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 74 GQ*CCVFAFCRTSYSTSEEKXVTQ 3
G+ CC F T Y + K VTQ
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,474
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 27
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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