Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_A09
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.8  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   8.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 284 PPXXXPPPXXXXKXXXPGGGGPPPPXXXKKKXXXPPP 394
           PP   PPP        P    PPPP    KK     P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +2

Query: 284 PPXXXPPPXXXXKXXXPGGGGPPPPXXXKKKXXXPPP 394
           P    PPP    K   PG   PPPP   +     PPP
Sbjct: 203 PGEHMPPPPMHHK---PGEHMPPPPMHHEPGEHMPPP 236


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.6 bits (46), Expect(2) = 8.2
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +3

Query: 285 PXXXXPPPXXXXXXXXXGGGXPPPP 359
           P    PPP          G  PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 21.0 bits (42), Expect(2) = 8.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 465 PPPPPP 482
           PPPPPP
Sbjct: 778 PPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,270
Number of Sequences: 5004
Number of extensions: 20776
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)