Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_A03
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   214   1e-57
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   214   1e-57
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   2.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   7.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   7.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   7.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  214 bits (522), Expect = 1e-57
 Identities = 98/117 (83%), Positives = 107/117 (91%)
 Frame = +2

Query: 242 MSNLADPVAFAKDFLAGGISAAVSKIAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 421
           MS LADPVAFAKDFLAGG++AA+SK  VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 422 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFAG 592
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF G
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVG 117



 Score = 29.1 bits (62), Expect = 0.052
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +2

Query: 296 ISAAVSKIAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 475
           +   V+ I   P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+
Sbjct: 221 VVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFS 278

Query: 476 NVIR 487
           N++R
Sbjct: 279 NILR 282



 Score = 28.7 bits (61), Expect = 0.069
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +2

Query: 269 FAKDFLAGGISAAVSKIAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 448
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 449 LSFWRGNFANVIRYFPTQALNFAFKD 526
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  214 bits (522), Expect = 1e-57
 Identities = 98/117 (83%), Positives = 107/117 (91%)
 Frame = +2

Query: 242 MSNLADPVAFAKDFLAGGISAAVSKIAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 421
           MS LADPVAFAKDFLAGG++AA+SK  VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 422 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFAG 592
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF G
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVG 117



 Score = 29.1 bits (62), Expect = 0.052
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +2

Query: 296 ISAAVSKIAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 475
           +   V+ I   P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+
Sbjct: 221 VVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFS 278

Query: 476 NVIR 487
           N++R
Sbjct: 279 NILR 282



 Score = 28.7 bits (61), Expect = 0.069
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +2

Query: 269 FAKDFLAGGISAAVSKIAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 448
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 449 LSFWRGNFANVIRYFPTQALNFAFKD 526
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 149 SGVSVSVIPHPRVPQLPPRHIHLVKIT 229
           +G   S+I  P   +LPP H H   +T
Sbjct: 86  TGFGGSIITIPPTRKLPPLHPHTAMVT 112


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 642 YPPWTFARY 668
           YP W+FA+Y
Sbjct: 112 YPDWSFAKY 120


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 642 YPPWTFARY 668
           YP W+FA+Y
Sbjct: 113 YPDWSFAKY 121


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 642 YPPWTFARY 668
           YP W+FA+Y
Sbjct: 107 YPDWSFAKY 115


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 642 YPPWTFARY 668
           YP W+FA+Y
Sbjct: 107 YPDWSFAKY 115


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 642 YPPWTFARY 668
           YP W+FA+Y
Sbjct: 107 YPDWSFAKY 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,502
Number of Sequences: 438
Number of extensions: 4066
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)