Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_A01
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 518 VCVAQKQSQEC*HMKLQ*WVDGLVQGPIQSRD 423
           +CV +  S+EC  MK    V G+    I  RD
Sbjct: 36  ICVPEIYSKECDEMKKDSAVKGIPVSCISGRD 67


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 518 VCVAQKQSQEC*HMKLQ*WVDGLVQGPIQSRD 423
           +CV +  S+EC  MK    V G+    I  RD
Sbjct: 36  ICVPEIYSKECDEMKKDSAVKGIPVSCISGRD 67


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 518 VCVAQKQSQEC*HMKLQ*WVDGLVQGPIQSRD 423
           +CV +  S+EC  MK    V G+    I  RD
Sbjct: 36  ICVPEIYSKECDEMKKDSAVKGIPVSCISGRD 67


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 541 CPXIFSGEXVLHKSNH 494
           CP  F    VL K+NH
Sbjct: 166 CPYFFFNSEVLQKANH 181


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 541 CPXIFSGEXVLHKSNH 494
           CP  F    VL K+NH
Sbjct: 166 CPYFFFNSEVLQKANH 181


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 11  FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QMETYVYKR 187
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 188 -RADGTH 205
            +A+  H
Sbjct: 286 YQANNVH 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,279
Number of Sequences: 438
Number of extensions: 4459
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)