Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_P21
         (1135 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.68 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.90 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 522 PPPPPPXGXEXXNPPP 475
           PPPPPP G     PPP
Sbjct: 762 PPPPPPPGVAGAGPPP 777



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 521 PPPPPPGGXXXXTPPP 474
           PPPPPPG      PPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
 Frame = -3

Query: 602 GGXXXPPPPFFFFFXXXKRXGGGKXXXPPPPP---PGGXXXXTPPP 474
           GG   PPPP           G G    PPPPP    GG     P P
Sbjct: 759 GGPPPPPPP-------PGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 522 PPPPPPXGXEXXNPPP 475
           PPPPPP G E  + PP
Sbjct: 10  PPPPPPPGFEPPSQPP 25



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 521 PPPPPPGGXXXXTPPP 474
           PPPPPPG      PPP
Sbjct: 11  PPPPPPGFEPPSQPPP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.154    0.536 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,679
Number of Sequences: 5004
Number of extensions: 22470
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 603631146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)