Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_P14
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.037
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 33 0.29
07_01_0479 + 3606663-3607448 32 0.51
01_03_0005 + 11568545-11569119,11569179-11569191 31 0.68
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 30 2.1
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 3.6
11_06_0610 - 25449085-25453284 29 4.8
01_01_0082 + 625198-625719 29 4.8
09_03_0145 - 12749288-12751510 28 6.3
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 6.3
05_01_0141 - 937428-937717,938483-938705 23 8.0
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 28 8.4
05_01_0142 - 940421-940701,941262-941574 28 8.4
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 28 8.4
03_01_0515 - 3864796-3865425 28 8.4
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.1 bits (72), Expect(2) = 0.037
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +3
Query: 273 PPFKXPXF*XPPXPGGPXXXNXXPXXXXXGXXPXXGGGXIPPX--GVXPPPPXXPGG 437
PP P PP P P P P G PP G PPPP PGG
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Score = 21.4 bits (43), Expect(2) = 0.037
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +3
Query: 549 PPPPXFFXGGEXTPP 593
PPPP GG PP
Sbjct: 367 PPPPGGKKGGPPPPP 381
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +3
Query: 264 WXKPPFKXPXF*XPPXPGGPXXXNXXPXXXXXGXXPXXGGGXIPPXGVXPPPPXXP 431
W +PP P PP P G N P P G PP PPP P
Sbjct: 436 WGQPP---PYASYPPPPPGSSMYNPPPPAPGQATPPPYGVQYAPPPAPIPPPGTAP 488
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.9 bits (69), Expect = 0.51
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = +3
Query: 246 PPSXFXWXKPPFKXPXF-*XPPXPGGPXXXNXXPXXXXXGXXPXXGGGXIPPXGV---XP 413
P + +PP P F PP P GP P P GG PP G+ P
Sbjct: 181 PQMPIPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQ-VRPGMPGG--PPPGMRPGMP 237
Query: 414 PPPXXPG 434
PPP PG
Sbjct: 238 PPPFRPG 244
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = +3
Query: 249 PSXFXWXKPPFKXPXF*XPPXPGGPXXXNXXPXXXXXGXXPXXGGGXIPPXGVXPPPP 422
P F PP P PP G P P G P P G+ PPPP
Sbjct: 194 PPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRP-GMPPPPP 250
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = -2
Query: 430 GXXGGGGXTPXGGXXPPPXXGXXPXXXXXGXKFXFXGPPGXGGF*XXGXLXGG 272
G GGGG T PPP G G + P G GG G GG
Sbjct: 79 GGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGG 131
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Frame = +3
Query: 312 PGGPXXXNXXPXXXXXGXXPXXGGGXIP--PXG----VXPPPPXXPGGV 440
PG P P G P GGG IP P G + PPPP GV
Sbjct: 227 PGHPGAFYPFPPPSLPGVGPPRGGGAIPGLPAGFPFLLRPPPPLPVPGV 275
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 306 PXPGGPXXXNXXPXXXXXGXXPXXGGGXIPPXGVXPPPPXXPGG 437
P P P P G P G G PPPP PGG
Sbjct: 349 PPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGG 392
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/71 (26%), Positives = 24/71 (33%)
Frame = +2
Query: 221 PETKRGSKPPFPXXMGKTPX*XPXXLKXPXPWGAPKXKFXXXXXXXGVXPXXGGGXXSPX 400
P + G+ PP G P P K P P P ++ P G +P
Sbjct: 504 PPAEYGAPPP--PSSGWLPK-SPERKKAPPPQAEPPTEYSPPATPESSPPPEGKSPPTPT 560
Query: 401 GXXSPPPXXAG 433
SPPP G
Sbjct: 561 ASHSPPPVPEG 571
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/56 (25%), Positives = 16/56 (28%)
Frame = -2
Query: 526 FFXPPXXXXXXKKKXXXXXXXPPXXKXFXTPPGXXGGGGXTPXGGXXPPPXXGXXP 359
++ PP PP PP GGGG P P P P
Sbjct: 64 YYPPPPPVYYPPPSPPPVAYPPPTTPSTNCPPPPYGGGGYNPTPSYNPTPGYNPTP 119
>09_03_0145 - 12749288-12751510
Length = 740
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 393 PPXGVXPPPPXXPG 434
PP G+ PPPP PG
Sbjct: 35 PPPGIQPPPPALPG 48
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = -2
Query: 463 PPXXKXFXTPPGXXGGGGXTPXGGXXPP-PXXGXXPXXXXXG 341
PP +P GGGG TP PP P G P G
Sbjct: 235 PPSPSSDTSPTTPGGGGGYTPTPSDTPPSPSSGSSPTTPGGG 276
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 23.4 bits (48), Expect(2) = 8.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 549 PPPPXFFXGGEXTPPXXF 602
PPPP + GG PP +
Sbjct: 48 PPPPAGYGGGYGYPPAGY 65
Score = 23.0 bits (47), Expect(2) = 8.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 369 PXXGGGXIPPXGVXPPPPXXPGG 437
P G PP PPPP GG
Sbjct: 34 PQQGYYPPPPTAYPPPPPAGYGG 56
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +3
Query: 273 PPFKXPXF*XPPXPGGPXXXNXXPXXXXXGXX--PXXGGGXIPPXGVXPPPPXXP 431
PP P F GGP N G GG +PP PPPP P
Sbjct: 19 PPRSKPRF---DRRGGPNPNNSYHRRGPPGGGGGDRRGGFQLPPDAAPPPPPPPP 70
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 303 PPXPGGPXXXNXXPXXXXXGXXPXXGGGXIPPXGVXPPPP 422
PP G P P G P G PP G PPPP
Sbjct: 30 PPHQGYPPQGYPPPP----GAYPPPPGAYPPPPGAYPPPP 65
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 53 SXKXEXEAGXTEXKXPARKRXXXXKISEPRNXNXXFSGPFE 175
S E +A T+ RK+ KI P N N +S PF+
Sbjct: 439 SGTMEPKASKTDQLKKKRKKADSTKIVHPNNANYGYSIPFD 479
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +3
Query: 246 PPSXFXWXKPPFKXPXF*XPPXPGGPXXXNXXPXXXXXGXXPXXGGGXIPPXGVXPPP 419
PPS PP P PP P P + P P PP PPP
Sbjct: 54 PPSVTSSPPPPAAGPLM--PPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPP 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,363,308
Number of Sequences: 37544
Number of extensions: 299750
Number of successful extensions: 1180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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