Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_P08
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.72
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.72
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 28 1.3
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 2.9
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 5.1
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 26 5.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 5.1
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 5.1
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 5.1
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 26 6.7
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 6.7
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 25 8.9
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 327 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGC 196
+C G+ YGQ C S++S AG N T+ A C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.72
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 457 EDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRNRQQDGSSV 633
E+ + N + Q+ DDH + SQE HEH D+ N + D S+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESI 563
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -1
Query: 282 LPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVALGV--ACVEVVG 109
L +C S L FAG+ A PKI + +W P+ VA+ V AC+ +
Sbjct: 342 LTSACSSGNSFL--FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLN 399
Query: 108 A 106
A
Sbjct: 400 A 400
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 429 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 319
ESI+ + V FK+R+D N E F EL +Q F C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 451 EEEDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHE---HYSPDDYEDPRNRQ 615
EE D+ + ND Q ED + + V +YR E E Y+ + Y+ + RQ
Sbjct: 60 EEYDSAIDVRNDISQDEDDYKRTNDVNDSYRLVRQYEAPKELLNEYADESYDPMQERQ 117
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 415 IHNALL-DALAVGEEEDADHHLHNDDHQQED 504
+H+ +L D LA D D L D+H Q+D
Sbjct: 56 LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +1
Query: 376 VSVGSLFE*HADAIHNALLDALAVGEEEDADHHLHNDD-HQQEDCVRDDHAVTLAYRSTA 552
+SV + E DA+ A + +V +E++ + L DD + +ED + D+ + +
Sbjct: 26 LSVSTKEELGDDAL--AAEEGQSVLDEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELE 83
Query: 553 SQERDHEHYSPD----DYEDPRNRQQDGSSVK 636
+E + E +P+ ++ R++ ++G + K
Sbjct: 84 EEEEEEEDATPEPVVTSKKNSRSKPKNGGASK 115
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 448 GEEEDADHHLHNDDHQQEDCVRDDH 522
G ++ HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 598 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 482
L SRR N + +V WS+ E +H + RNL + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 535 AYRSTASQERDHEHYSPDDYEDPRNRQQDGSSVKSLTMG 651
++ S + + P D EDPRN Q D +T G
Sbjct: 118 SFESDQQESHTGQANFPTDQEDPRNPQLDSQYEAFITQG 156
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 536 RIAPQHPKNAITNITAPTTMKIHG 607
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -1
Query: 390 RSDANADEAAEAVFSEL--QRQFECCGNTGAINYGQFT--LPESCCVKKSILSTFAG 232
R D+ +++ +AVF EL + +FE + + + ES +KKSI +TF G
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,980
Number of Sequences: 5004
Number of extensions: 49807
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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