Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_P06
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 59 8e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 58 2e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 53 4e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 53 4e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 9e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 52 1e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 51 2e-07
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 50 3e-07
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 50 4e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 50 4e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 50 5e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 47 3e-06
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 44 2e-05
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 44 3e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 5e-05
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 42 9e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 42 1e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 40 3e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 40 3e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 5e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 40 5e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 38 0.002
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 35 0.011
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 32 0.076
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.54
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.2
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 2.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.9
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 26 5.0
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 5.0
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 26 6.6
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 6.6
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 8.8
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 58.8 bits (136), Expect = 8e-10
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
L RFR + A +LVATDVA+RGLDIP V VINF LP + YIH
Sbjct: 301 LGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIH 344
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
L F+ + VLVATDVAARGLDIP V VIN T P T+E Y+H
Sbjct: 459 LNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 53.2 bits (122), Expect = 4e-08
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
L+ FR+ + + L+ATDVA+RG+DI G+ VIN+ PAT E Y+H
Sbjct: 547 LEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLH 590
Score = 42.3 bits (95), Expect = 7e-05
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 2/150 (1%)
Frame = -1
Query: 742 QEFVRXRKGXXSTREAMXAAXVSRTFRDRTVVXVQTKRQAHRXHVMLGMLGVQGGRVTRS 563
QEFVR R R AM F RT++ ++K AH+ V+ G+L + + S
Sbjct: 478 QEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGS 537
Query: 562 LEPAPALGLF*SVSGSNRPMC-WWLQTWRPAAWXXXXXXXXXXXXXXXX*NIIYTGWVAQ 386
L + ++ C + L T + + +Y V +
Sbjct: 538 LSQEQRVR---ALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGR 594
Query: 385 PGRVA-PGVSVSLAGEGERNLVKSIVKRAS 299
R G +++LAGEG+R ++K + K +S
Sbjct: 595 TARAGRSGRAITLAGEGDRKVLKGVFKNSS 624
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.2 bits (122), Expect = 4e-08
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+++ R + AD+LVATD+A RG+DIP V+ V+N+ + ++E Y H
Sbjct: 559 IEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTH 602
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.0 bits (119), Expect = 9e-08
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
L+ FR + ++VAT VA+RGLDIP V VIN+ LP ++ Y+H
Sbjct: 473 LELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
L +F+ LVATDVAARGLDIP V+ VIN+ +P + YIH
Sbjct: 328 LNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
L++F+ VLV TDVAARG+DIP V VI++ +P T + Y+H
Sbjct: 432 LEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVH 475
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = -3
Query: 539 TFLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
T + FR + +L+ TD+ ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 299 TLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 50.0 bits (114), Expect = 4e-07
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
++ FR+ + VL+ TD+ ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 303 MQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIH 346
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 50.0 bits (114), Expect = 4e-07
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
L FR ++ ++VATDVA+RG+D+ G+ V N+ P E Y+H
Sbjct: 412 LNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 49.6 bits (113), Expect = 5e-07
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
L +FR+ + VL+ATD+ ARG+D GV VINF P ++ YIH
Sbjct: 331 LAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 47.2 bits (107), Expect = 3e-06
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = -3
Query: 557 TSPSAWTFLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
T+ + + FR+ Q+ +L ATDV ARG+D P + V+ T P+ + YIH
Sbjct: 328 TTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -3
Query: 530 KRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
K F++ + VATDV RG+DI VN VIN+ +P + + Y+H
Sbjct: 339 KAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLH 381
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -3
Query: 506 DVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
DVL+AT V ARGLD+ + V+N+ P +E Y+H
Sbjct: 720 DVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVH 754
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 42.7 bits (96), Expect = 5e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -3
Query: 503 VLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+L+ TDVAARGLD+P V+ V+ + P + + Y+H
Sbjct: 499 ILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+ FR + ++LV TDVA+RG+DIP + VIN+ P + ++H
Sbjct: 389 INNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVH 432
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = -3
Query: 524 FREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
FR LV +D+ RG+DI VN VINF P E Y+H
Sbjct: 327 FRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -3
Query: 527 RFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+F + VL TD+ ARGLD P V+ VI P ++ YIH
Sbjct: 330 KFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIH 371
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 405
L +F+ + +VL+AT VA G+D+P N VI F + T+ Y+
Sbjct: 416 LHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -3
Query: 539 TFLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
TF + F + +L+ T+VAARGLDIP V+ ++ + P YIH
Sbjct: 378 TFFE-FCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIH 422
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.5 bits (88), Expect = 5e-04
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+ RF ++LV +D+ ARG+D+ VIN+ P ++ Y+H
Sbjct: 480 ISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -3
Query: 524 FREQQADVLVATDVAARGLDIPGVNTVINFTLP 426
FR + VLV T+V ARG+D+ VN V+N+ +P
Sbjct: 398 FRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 430
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.1 bits (77), Expect = 0.011
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 536 FLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
F K + + VL TD+A+RGLDIP V+ V+ P + + H
Sbjct: 301 FEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 32.3 bits (70), Expect = 0.076
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 479 ARGLDIPGVNTVINFTLPATLEHYIH 402
ARGLD V V+NF +P+ + YIH
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIH 412
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -3
Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPAT 420
+K+F++ + + L+AT + GLDI V+ +I + A+
Sbjct: 485 VKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASAS 522
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -3
Query: 134 KKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEKKKK 3
+KDE + + E +R+++ + K+K+E+KE+ EKKKK
Sbjct: 435 EKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEK------KEKKKK 472
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -2
Query: 243 KLIKLEPEIVAILDEEYAEKQMXQD--GEANRQIRGR 139
K+I EPE+ AI D E ++KQ+ ++ EA+R ++ R
Sbjct: 116 KMINEEPELKAIEDTEESKKQLQREESKEADRLLQER 152
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 503 VLVATDVAARGLDIPGVNTVINFTLPATLEHYI 405
+++AT G++ GV V+++ LPA+ Y+
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 503 VLVATDVAARGLDIPGVNTVINFTLPATLEHYI 405
+++AT G++ GV V+++ LPA+ Y+
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 249 REKLIKLEPEIVAILDEEYAEKQMXQDGEA 160
REKL+K E IL ++ A+K +DG A
Sbjct: 12 REKLVKDETSEALILAKKAADKSPKEDGRA 41
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 173 KMEKQTAKLEVVLKKDEAQPGPQHEPQRQRD 81
K E+ AK + L +DE +P P H RD
Sbjct: 413 KSERPLAKQQNALLEDEGKPTPSHTLLHNRD 443
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 KMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEKKKK 3
K++ + E LKK+E + + E + Q Q K+K +EKER+ E+ K
Sbjct: 270 KLDLEIESGEYFLKKEEKERKKRAEKKEQ----QKEKKKEKEKERMKAFIPPEESSK 322
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 699 RQXWRRLXPARSATGPXXXCRPSARRTASTSCWACWAFKAAELH 568
RQ +RR ++ G PS RR S SC ++ + LH
Sbjct: 741 RQRYRRSYAGSTSRGRSFSRSPSYRRRLSMSCSVSYSRSPSPLH 784
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 539 TFLKRFREQQADVLVATDVAARGLDIPGVNTVI 441
T ++ FR+++ VLV V G DIP ++ ++
Sbjct: 306 TLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,904
Number of Sequences: 5004
Number of extensions: 40726
Number of successful extensions: 152
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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