Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_P06
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       48   7e-08
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 48.4 bits (110), Expect = 7e-08
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = -3

Query: 533 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
           L  F+  +  +LVAT VAARGLDI  V+ VIN+ LP  ++ Y+H
Sbjct: 494 LADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVH 537


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 574 VTRSLEPAPALGLF*SVSGSNRPMCWW 494
           + ++L+P PA+ L  S +G+  P   W
Sbjct: 429 IEQTLQPGPAVSLKCSAAGNPTPQVTW 455


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 574 VTRSLEPAPALGLF*SVSGSNRPMCWW 494
           + ++L+P PA+ L  S +G+  P   W
Sbjct: 429 IEQTLQPGPAVSLKCSAAGNPTPQVTW 455


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 104 HEPQRQRDWFQTPKQKREEKERL 36
           H P +Q+   Q  +Q+R+E+ RL
Sbjct: 160 HRPYQQQQQQQQRQQQRQEERRL 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,802
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)