Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_O24
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.9  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.1  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.1  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.1  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 18  SSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR-SRDARVKK 194
           S +  S  +  S   SQH   L    P  E+KS  D S PR +   +      R  R  K
Sbjct: 129 SQNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYRYLK 187

Query: 195 KTDSIDL 215
             D+ +L
Sbjct: 188 NPDAWNL 194


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
 Frame = -1

Query: 358 AEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETLRRSPFGSRRSMLSVFFLTRA 179
           + +++   GK+   V P  +      DF + +S S+    ++S  G  R           
Sbjct: 306 SSSTVERKGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPC 358

Query: 178 SRLRRSGYNSVRC-RGSE*SVDDFRSWRGVVLGR 80
            R R +G NS  C    +  V + R  RG   GR
Sbjct: 359 GRCRDAGLNSEDCISDDDMPVSNARKPRGRGRGR 392


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 121 VDDFRSWRGVVLGRAASCCDLLRLS 47
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 409 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 284
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,165
Number of Sequences: 5004
Number of extensions: 39780
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)