Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_O20
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.33
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.1
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.4
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 7.2
02_05_0700 + 31018480-31019832 28 7.2
03_06_0297 - 32924162-32924605 28 9.5
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.5
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = -2
Query: 769 PPXXXXKXXGXXPXKKKXXPPPXXXGEKXPGXXXPGXXXPXPPXXKXPFPXXPXXPXXXX 590
PP P K PPP G P P P PP K P P P P
Sbjct: 318 PPKPAAAAPPPPPPPKAAPPPPPPKGPPPP---PPAKGPPPPPPPKGPSPPPPPPPGGKK 374
Query: 589 FXPGVKP 569
P P
Sbjct: 375 GGPPPPP 381
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 84 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 185
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 76 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 222
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 243 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 64
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 63 ILHSF 49
+LHSF
Sbjct: 1408 LLHSF 1412
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -2
Query: 712 PPPXXXGEKXPGXXXPGXXXPXPPXXKXPFP 620
PPP G+K P P P PP P P
Sbjct: 752 PPPLMTGKKAPAPPPPPPQAPKPPGTVPPPP 782
>02_05_0700 + 31018480-31019832
Length = 450
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -2
Query: 706 PXXXGEKXPGXXXPGXXXPXPPXXKXPFPXXP 611
P GE PG PG P P P P P
Sbjct: 24 PPLAGENLPGQLLPGEKPPGQPLPGQPLPGQP 55
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/84 (29%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Frame = -2
Query: 733 PXKKKXXPPPXXXGEKXPGXXXPGXXXPXPP--XXKXPFPXXPXXPXXXXFXPGVK-PXX 563
P + P G+ PG PG P P K P P P PG P
Sbjct: 50 PLPGQPLPGQSLPGQPLPGQPLPGQSLPGQPLVGEKPPGQPLPGQPLPGQSLPGQPLPGQ 109
Query: 562 VXRGSXRXFHPLVXGQG-KGXLPP 494
G PLV GQ G PP
Sbjct: 110 PLVGEKPPGQPLVPGQPLVGEKPP 133
>03_06_0297 - 32924162-32924605
Length = 147
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = -2
Query: 712 PPPXXXGEKXPGXXXPGXXXPXPPXXKXPFPXXPXXPXXXXFXPGVKP 569
PP PG PG P P P P P P P P
Sbjct: 73 PPGLDVPMPPPGAPTPGPEQPGPSIPSPPMPEVPDVPRNPDVPPPKPP 120
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 444 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 355
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,550,173
Number of Sequences: 37544
Number of extensions: 315867
Number of successful extensions: 862
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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