Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_O14
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.33
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 32 0.44
11_06_0610 - 25449085-25453284 30 2.4
08_01_0059 - 394001-394708 29 3.1
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 29 5.4
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 28 9.5
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 9.5
03_01_0515 - 3864796-3865425 28 9.5
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 28 9.5
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/74 (29%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Frame = +1
Query: 502 SPXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXG--PPXXKXXXPPPXXFFXXXXXXXPX 675
SP P P P PK P P G PP PPP P
Sbjct: 310 SPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
Query: 676 XXXKKXGPPXXXXK 717
KK GPP K
Sbjct: 370 PGGKKGGPPPPPPK 383
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Frame = +1
Query: 496 GVSPXPQKGXXPPXXXXXPKKKXXPKNP--PXXPXXXGPPXXKXXXPPPXXFFXXXXXXX 669
G P PQ G PP P P P P GPP + PPP ++
Sbjct: 39 GHMPPPQ-GAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPP 97
Query: 670 PXXXXKKXGPP 702
P PP
Sbjct: 98 PYGVNSSQPPP 108
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +1
Query: 502 SPXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPPXXFFXXXXXXXPXXX 681
SP +K PP P P PP P PP K PP P
Sbjct: 1113 SPPTEKSLPPPATVSLPPPTVKPL-PPPVPVSSPPPPEKSPPPPAPVILPPPPIKSPPPP 1171
Query: 682 XKKXGPP 702
PP
Sbjct: 1172 APVISPP 1178
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Frame = +1
Query: 505 PXPQKGXXPPXXXXX-PKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
P P+K PP P +PP PP K PPP
Sbjct: 816 PTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPP 860
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/66 (25%), Positives = 18/66 (27%)
Frame = +1
Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPPXXFFXXXXXXXPXXXX 684
P P+K PP P PP P PP K PP P
Sbjct: 1146 PPPEKSPPPPAPVILP-PPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPA 1204
Query: 685 KKXGPP 702
PP
Sbjct: 1205 PVISPP 1210
>08_01_0059 - 394001-394708
Length = 235
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 505 PXPQKGXXPP-XXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
P P++ PP P++ P +PP P PP + PPP
Sbjct: 5 PPPRRAPPPPATPPPPPRRAPPPPSPPIRPPP--PPTPRPYAPPP 47
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/45 (26%), Positives = 16/45 (35%)
Frame = +1
Query: 502 SPXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
+P PP P+++ PP P PP PPP
Sbjct: 53 APRTAASPSPPSPAPSPQQQRVASPPPTIPVKFSPPAAPVKVPPP 97
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/74 (25%), Positives = 23/74 (31%)
Frame = +1
Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPPXXFFXXXXXXXPXXXX 684
P P +G PP P PP P GPP + P P + P
Sbjct: 249 PPPGQGPVPPRDAP-PMHHAQGNVPPPPPPNAGPPNYQPHAPNPQGYTNYQQGGAPGY-- 305
Query: 685 KKXGPPXXXXKKXG 726
+ GPP G
Sbjct: 306 -QGGPPGYQGSNQG 318
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +1
Query: 511 PQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
P G PP P PP P PP PPP
Sbjct: 64 PMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPPPSSPPP 105
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = +1
Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
P P PP P +PP P PP PPP
Sbjct: 75 PPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPP 118
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Frame = +1
Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGP-PXXKXXXPPP 636
P P+ PP PK K P P GP P K P P
Sbjct: 161 PKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGP 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,422
Number of Sequences: 37544
Number of extensions: 270640
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -