Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_O14
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   0.92 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   0.92 
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    25   1.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.1  
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    25   2.7  
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   3.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   3.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   3.7  
AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen prot...    24   7.6  
X64435-1|CAA45773.1|  318|Caenorhabditis elegans collagen protein.     28   8.6  
U41624-3|AAF99944.1|  318|Caenorhabditis elegans Dumpy : shorter...    28   8.6  

>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +1

Query: 502 SPXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPP 633
           S  P+    P      P  +  P +PP  P   GPP  +   PP
Sbjct: 218 SEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPP 261


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
 Frame = +1

Query: 505 PXPQKGXXPPXXXXXPKKKXXPKN-----PPXXPXXXGPPXXKXXXPPP 636
           P P  G  PP     P +   P       PP  P   GPP      PPP
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 337


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
 Frame = +1

Query: 505 PXPQKGXXPPXXXXXPKKKXXPKN-----PPXXPXXXGPPXXKXXXPPP 636
           P P  G  PP     P +   P       PP  P   GPP      PPP
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 347


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 25.0 bits (52), Expect(2) = 1.6
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 470 PXPKGPXGPXXFFKFEGIRRSSGSQQXGDP 381
           P P GP GP       G    SGS Q G P
Sbjct: 243 PGPAGPPGPPGPAGAPGQPGQSGSAQPGGP 272



 Score = 23.8 bits (49), Expect(2) = 1.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 512 GXGETPXNQKGFXLPXPKGPXGP 444
           G    P    G  LP P GP GP
Sbjct: 192 GAPGAPGQSGGASLPGPPGPAGP 214


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +1

Query: 496 GVSPXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
           G  P P  G  PP     P     P   P  P    P   K   PPP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +1

Query: 496 GVSPXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
           G  P P  G  PP     P     P   P  P    P   K   PPP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +1

Query: 496 GVSPXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
           G  P P  G  PP     P     P   P  P    P   K   PPP
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 24.6 bits (51), Expect(2) = 2.7
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 470 PXPKGPXGPXXFFKFEGIRRSSGSQQXGDP 381
           P P GP GP       G    SGS Q G P
Sbjct: 239 PGPAGPPGPPGPAGAPGQPGQSGSGQPGGP 268



 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 512 GXGETPXNQKGFXLPXPKGPXGP 444
           G    P    G  LP P GP GP
Sbjct: 188 GAPGVPGQTGGASLPGPPGPAGP 210


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 333 KLNPYAAVXKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 172
           K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RRR+
Sbjct: 360 KMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRRE 412


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +1

Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
           P P  G  PP     P       +PP  P    PP  +   PPP
Sbjct: 257 PPPAAGSPPPPRTGSPPPPPTG-SPPPPPAGGSPPPPRAGSPPP 299


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +1

Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
           P P  G  PP     P       +PP  P    PP  +   PPP
Sbjct: 278 PPPAAGSPPPPRTGSPPPPPTG-SPPPPPAGGSPPPPRAGSPPP 320


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +1

Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPP 636
           P P  G  PP     P       +PP  P    PP  +   PPP
Sbjct: 263 PPPAAGSPPPPRTGSPPPPPTG-SPPPPPAGGSPPPPRAGSPPP 305


>AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen protein
           101 protein.
          Length = 314

 Score = 24.2 bits (50), Expect(2) = 7.6
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -2

Query: 551 GXXXXXGGXXPFWGXGETPXNQKGFXLPXPKGPXGP 444
           G     G   P    G+ P    G  LP P GP GP
Sbjct: 177 GPSGAPGQKGPSGAPGQ-PGRSGGASLPGPPGPAGP 211



 Score = 22.2 bits (45), Expect(2) = 7.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -2

Query: 470 PXPKGPXGPXXFFKFEGIRRSSGSQQXGDP 381
           P P GP GP       G    +G  Q G P
Sbjct: 240 PGPAGPPGPAGPAGAPGQPGQAGHAQPGQP 269


>X64435-1|CAA45773.1|  318|Caenorhabditis elegans collagen protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/47 (27%), Positives = 16/47 (34%)
 Frame = +1

Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPPXXF 645
           P P+    PP     P +   P  P       GPP  +    PP  F
Sbjct: 220 PGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPF 266


>U41624-3|AAF99944.1|  318|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 7 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/47 (27%), Positives = 16/47 (34%)
 Frame = +1

Query: 505 PXPQKGXXPPXXXXXPKKKXXPKNPPXXPXXXGPPXXKXXXPPPXXF 645
           P P+    PP     P +   P  P       GPP  +    PP  F
Sbjct: 220 PGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPF 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,420,752
Number of Sequences: 27780
Number of extensions: 196048
Number of successful extensions: 652
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)