Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_O08
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 159 3e-39
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 159 3e-39
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 159 3e-39
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 159 3e-39
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 159 3e-39
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 159 3e-39
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 159 3e-39
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 159 3e-39
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 159 bits (385), Expect = 3e-39
Identities = 85/163 (52%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Frame = -3
Query: 579 TKKVPRKXXKVLGN-CXHWXWHPFR-GXXXXXXXXXXXXSPY*NEQEXYRIGQGIHKKDG 406
TKK+PRK K L WHP R + YRIG+ ++G
Sbjct: 237 TKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG 296
Query: 405 KVIKNNAXTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 226
K NN TE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TK
Sbjct: 297 K---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTK 353
Query: 225 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
R A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 354 RVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 159 bits (385), Expect = 3e-39
Identities = 85/163 (52%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Frame = -3
Query: 579 TKKVPRKXXKVLGN-CXHWXWHPFR-GXXXXXXXXXXXXSPY*NEQEXYRIGQGIHKKDG 406
TKK+PRK K L WHP R + YRIG+ ++G
Sbjct: 237 TKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG 296
Query: 405 KVIKNNAXTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 226
K NN TE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TK
Sbjct: 297 K---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTK 353
Query: 225 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
R A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 354 RVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 159 bits (385), Expect = 3e-39
Identities = 85/163 (52%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Frame = -3
Query: 579 TKKVPRKXXKVLGN-CXHWXWHPFR-GXXXXXXXXXXXXSPY*NEQEXYRIGQGIHKKDG 406
TKK+PRK K L WHP R + YRIG+ ++G
Sbjct: 139 TKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG 198
Query: 405 KVIKNNAXTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 226
K NN TE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TK
Sbjct: 199 K---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTK 255
Query: 225 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
R A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 256 RVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 159 bits (385), Expect = 3e-39
Identities = 85/163 (52%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Frame = -3
Query: 579 TKKVPRKXXKVLGN-CXHWXWHPFR-GXXXXXXXXXXXXSPY*NEQEXYRIGQGIHKKDG 406
TKK+PRK K L WHP R + YRIG+ ++G
Sbjct: 189 TKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG 248
Query: 405 KVIKNNAXTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 226
K NN TE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TK
Sbjct: 249 K---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTK 305
Query: 225 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
R A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 306 RVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 159 bits (385), Expect = 3e-39
Identities = 85/163 (52%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Frame = -3
Query: 579 TKKVPRKXXKVLGN-CXHWXWHPFR-GXXXXXXXXXXXXSPY*NEQEXYRIGQGIHKKDG 406
TKK+PRK K L WHP R + YRIG+ ++G
Sbjct: 237 TKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG 296
Query: 405 KVIKNNAXTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 226
K NN TE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TK
Sbjct: 297 K---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTK 353
Query: 225 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
R A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 354 RVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 159 bits (385), Expect = 3e-39
Identities = 85/163 (52%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Frame = -3
Query: 579 TKKVPRKXXKVLGN-CXHWXWHPFR-GXXXXXXXXXXXXSPY*NEQEXYRIGQGIHKKDG 406
TKK+PRK K L WHP R + YRIG+ ++G
Sbjct: 139 TKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG 198
Query: 405 KVIKNNAXTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 226
K NN TE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TK
Sbjct: 199 K---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTK 255
Query: 225 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
R A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 256 RVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 159 bits (385), Expect = 3e-39
Identities = 85/163 (52%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Frame = -3
Query: 579 TKKVPRKXXKVLGN-CXHWXWHPFR-GXXXXXXXXXXXXSPY*NEQEXYRIGQGIHKKDG 406
TKK+PRK K L WHP R + YRIG+ ++G
Sbjct: 189 TKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG 248
Query: 405 KVIKNNAXTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 226
K NN TE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TK
Sbjct: 249 K---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTK 305
Query: 225 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
R A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 306 RVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 159 bits (385), Expect = 3e-39
Identities = 85/163 (52%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Frame = -3
Query: 579 TKKVPRKXXKVLGN-CXHWXWHPFR-GXXXXXXXXXXXXSPY*NEQEXYRIGQGIHKKDG 406
TKK+PRK K L WHP R + YRIG+ ++G
Sbjct: 237 TKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG 296
Query: 405 KVIKNNAXTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 226
K NN TE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TK
Sbjct: 297 K---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTK 353
Query: 225 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 97
R A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 354 RVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,297,159
Number of Sequences: 27780
Number of extensions: 310629
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -