Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_O04
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   5.6  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = -1

Query: 563 PXFXXG-GPXXXXPPPXXXGEKKRGSPPXFXGG 468
           P F  G GP    PPP   G      PP F GG
Sbjct: 758 PPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGG 790


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 542  PXXXXPPPXXXGEKKRGSPPXFXGGGXXP 456
            P     PP   G   RG PP F GG   P
Sbjct: 1484 PMRGGGPPMRGGPPMRGGPPMFRGGPPGP 1512



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -1

Query: 548  GGPXXXXPPPXXXGEKKRGSPPXFXGGG 465
            GGP    PPP       RG PP   GGG
Sbjct: 1466 GGP----PPPRGMNSPMRGMPPPMRGGG 1489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,464
Number of Sequences: 27780
Number of extensions: 168495
Number of successful extensions: 208
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)