Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_O03
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0070 - 542603-542686,542803-543441                               31   0.81 
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    30   1.9  
12_02_1174 - 26696869-26698191                                         28   7.5  

>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 23/80 (28%), Positives = 23/80 (28%)
 Frame = +2

Query: 365 TPAPPXXXTPPRXPXXXXCPRDXXGALARLPXXXRGDXCPSXRXQPRXXXXXVVXXPAXX 544
           TPAP    TPP  P     P          P        P     P       V  P   
Sbjct: 54  TPAPTATPTPPVAPAK--APPVAPAVAPVTPPPPTPKKAPPPPVTPPPVTPPPVTPPPVS 111

Query: 545 XPPXXXPPXAPXXDPPXRAA 604
            PP   PP  P   PP  AA
Sbjct: 112 PPPATPPPALPPSTPPPVAA 131


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/52 (30%), Positives = 19/52 (36%)
 Frame = +1

Query: 478 LPFVSTXTAXXAXXGGLXAXXXXPPXSXPPXGPXXXPPXPGXXXVXXGPVXP 633
           +P + +  A  A    L A    PP   PP  P   PP P       GP  P
Sbjct: 563 IPKLLSPPAPQAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRP 614


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/77 (25%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
 Frame = +1

Query: 547 PPXSXPPXGPXXXPPXPGXXXVXXGPVXPXXXXXXXXXXXPS-XXXXXXXPXXXXXXXXX 723
           PP S PP  P   PP P        PV             PS        P         
Sbjct: 148 PPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQ 207

Query: 724 XGPGPXXXVXXXXPPPP 774
             P P   +    PPPP
Sbjct: 208 PKPQPPPTLPPPSPPPP 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,270
Number of Sequences: 37544
Number of extensions: 181979
Number of successful extensions: 1146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)