Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_N14
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0059 - 394001-394708                                             29   3.2  
03_05_0576 + 25765137-25766420                                         28   9.7  

>08_01_0059 - 394001-394708
          Length = 235

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 542 PRXRXXPNXEPRXXPSXAXXPPQPXXRXPSXPNP 643
           PR    P   P   P  A  PP P  R P  P P
Sbjct: 7   PRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTP 40



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +2

Query: 560 PNXEPRXXPSXAXXPPQPXXRXPSXPNPXXXXLXPXXXXP 679
           P   PR  P     PP P  R P  P+P      P    P
Sbjct: 3   PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRP 42


>03_05_0576 + 25765137-25766420
          Length = 427

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 533 AGRPRXRXXPNXEPRXXPSXAXXPP-QPXXRXPSXPNP 643
           A R + R  P   P   PS +  PP QP    P  P+P
Sbjct: 56  ASRRKKRGGPEAPPSPSPSPSPSPPPQPSSPPPPPPSP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,927
Number of Sequences: 37544
Number of extensions: 179071
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)