Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_N13
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.30
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 32 0.40
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.40
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.40
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.40
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 32 0.53
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 32 0.53
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.92
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.92
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 31 1.2
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 31 1.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 2.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 2.8
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 2.8
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 29 2.8
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 4.9
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.5
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 28 6.5
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 6.5
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 28 8.6
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 8.6
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.7 bits (71), Expect = 0.30
Identities = 30/120 (25%), Positives = 32/120 (26%), Gaps = 1/120 (0%)
Frame = +3
Query: 378 AXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXXXPXXX 557
A PPP P P R G + P PP P P P P R
Sbjct: 120 ASPPPPPPPR--KSRAGGSSPP-PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPP 176
Query: 558 XXXLXGPPXXRXXXSPPXPPXXPXPSXPGXXXRXSXXRXXSPXSRXXXS-XPGXQNXXXG 734
PP PP PP R +P R S PG N G
Sbjct: 177 SPEPRNPPRTPPSPIPPPPPRLNSHDRRALRARRPMVHRPAPYGRRSISQGPGRNNDDWG 236
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 32.3 bits (70), Expect = 0.40
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +3
Query: 465 PPLCPPXXQXXPXXXPTLPRXPNRXXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXP 641
PPL PP TL N P GP PP PP P P P
Sbjct: 91 PPLLPPAVAPPTNGQETLVGINNPVQPPPPVQYQNQGPQYIEAPPPPPSPPPPPPPPPP 149
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.40
Identities = 28/92 (30%), Positives = 31/92 (33%)
Frame = +3
Query: 357 RRAPPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNR 536
R+APP + PPP P P G + L S PP PP P P P
Sbjct: 229 RQAPPAGSPPPP-PPPKG--------SPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPT 277
Query: 537 XXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXP 632
P PP R PP PP P
Sbjct: 278 GSPPPPPAG--GSPPPPRAGSPPPPPPPRGSP 307
Score = 28.3 bits (60), Expect = 6.5
Identities = 28/116 (24%), Positives = 30/116 (25%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXXX 545
PP A PP P P G + PP PP P P P
Sbjct: 257 PPPAAGSPPPPRTGSPPPPPTGSPPP-PPAGGSPP--PPRAGSPPPPPPPRGSPPTGSLP 313
Query: 546 PXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXPGXXXRXSXXRXXSPXSRXXXSXPG 713
P G P SPP PP + S P R PG
Sbjct: 314 PPQAG----GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPG 365
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.40
Identities = 28/92 (30%), Positives = 31/92 (33%)
Frame = +3
Query: 357 RRAPPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNR 536
R+APP + PPP P P G + L S PP PP P P P
Sbjct: 250 RQAPPAGSPPPP-PPPKG--------SPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPT 298
Query: 537 XXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXP 632
P PP R PP PP P
Sbjct: 299 GSPPPPPAG--GSPPPPRAGSPPPPPPPRGSP 328
Score = 28.3 bits (60), Expect = 6.5
Identities = 28/116 (24%), Positives = 30/116 (25%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXXX 545
PP A PP P P G + PP PP P P P
Sbjct: 278 PPPAAGSPPPPRTGSPPPPPTGSPPP-PPAGGSPP--PPRAGSPPPPPPPRGSPPTGSLP 334
Query: 546 PXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXPGXXXRXSXXRXXSPXSRXXXSXPG 713
P G P SPP PP + S P R PG
Sbjct: 335 PPQAG----GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPG 386
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.40
Identities = 28/92 (30%), Positives = 31/92 (33%)
Frame = +3
Query: 357 RRAPPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNR 536
R+APP + PPP P P G + L S PP PP P P P
Sbjct: 235 RQAPPAGSPPPP-PPPKG--------SPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPT 283
Query: 537 XXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXP 632
P PP R PP PP P
Sbjct: 284 GSPPPPPAG--GSPPPPRAGSPPPPPPPRGSP 313
Score = 28.3 bits (60), Expect = 6.5
Identities = 28/116 (24%), Positives = 30/116 (25%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXXX 545
PP A PP P P G + PP PP P P P
Sbjct: 263 PPPAAGSPPPPRTGSPPPPPTGSPPP-PPAGGSPP--PPRAGSPPPPPPPRGSPPTGSLP 319
Query: 546 PXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXPGXXXRXSXXRXXSPXSRXXXSXPG 713
P G P SPP PP + S P R PG
Sbjct: 320 PPQAG----GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPG 371
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 31.9 bits (69), Expect = 0.53
Identities = 22/87 (25%), Positives = 23/87 (26%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXXX 545
P PP P P G S P L P P P P P P
Sbjct: 149 PQGPPGPPGPPGPPGDSGEPGSPG--LPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEPGV 206
Query: 546 PXXXXXXLXGPPXXRXXXSPPXPPXXP 626
P + G P P PP P
Sbjct: 207 PAQSEPLIPGEPGPPGEAGPQGPPGSP 233
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 31.9 bits (69), Expect = 0.53
Identities = 22/87 (25%), Positives = 23/87 (26%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXXX 545
P PP P P G S P L P P P P P P
Sbjct: 149 PQGPPGPPGPPGPPGDSGEPGSPG--LPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEPGV 206
Query: 546 PXXXXXXLXGPPXXRXXXSPPXPPXXP 626
P + G P P PP P
Sbjct: 207 PAQSEPLIPGEPGPPGEAGPQGPPGSP 233
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 0.92
Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 2/94 (2%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPP--LCPPXXQXXPXXXPTLPRXPNRX 539
P PPP P P G + P G + PP PP P P R P
Sbjct: 291 PSSGMWPPPPPPPPGRTPGPPGMPGM---PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGM 347
Query: 540 XXPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXP 641
P GP PP PP P P+ P
Sbjct: 348 PPPPPPRYPSAGP-----GMYPPPPPSRP-PAPP 375
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +3
Query: 465 PPLCPPXXQXXPXXXPTLPRXPNRXXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXPG 644
PP+ PP P P +P P P PP PP PP P PG
Sbjct: 261 PPVPPPPPSVTP-MPPPMPPTPGMTPRPPP-------PPSSGMWPPPPPPPPGRTPGPPG 312
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 0.92
Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 2/94 (2%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPP--LCPPXXQXXPXXXPTLPRXPNRX 539
P PPP P P G + P G + PP PP P P R P
Sbjct: 301 PSSGMWPPPPPPPPGRTPGPPGMPGM---PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGM 357
Query: 540 XXPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXP 641
P GP PP PP P P+ P
Sbjct: 358 PPPPPPRYPSAGP-----GMYPPPPPSRP-PAPP 385
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +3
Query: 465 PPLCPPXXQXXPXXXPTLPRXPNRXXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXPG 644
PP+ PP P P +P P P PP PP PP P PG
Sbjct: 271 PPVPPPPPSVTP-MPPPMPPTPGMTPRPPP-------PPSSGMWPPPPPPPPGRTPGPPG 322
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/93 (27%), Positives = 28/93 (30%)
Frame = +3
Query: 363 APPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXX 542
APP PP P P G P G A P PP P P P
Sbjct: 204 APPGDGGPPGQPGPDGPPGAP-GNAGEDGKPGDQGPRGPPGIPGAPGQ----PGRPGPPG 258
Query: 543 XPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXP 641
P + GP P PP P P+ P
Sbjct: 259 EPGTYKTEV-GPAGRAGAPGRPGPPGQPGPAGP 290
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/93 (27%), Positives = 28/93 (30%)
Frame = +3
Query: 363 APPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXX 542
APP PP P P G P G A P PP P P P
Sbjct: 185 APPGDGGPPGQPGPDGPPGAP-GNAGEDGKPGDQGPRGPPGIPGAPGQ----PGRPGPPG 239
Query: 543 XPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXP 641
P + GP P PP P P+ P
Sbjct: 240 EPGTYKTEV-GPAGRAGAPGRPGPPGQPGPAGP 271
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +3
Query: 369 PXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXP-PLCPPXXQXXPXXXPTLPRXPNRXXX 545
P + PPP P P G P G + + S P P P P P+ P R
Sbjct: 55 PDPSSPPPAPRPSGQPPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPRPTRLPR 114
Query: 546 P 548
P
Sbjct: 115 P 115
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 465 PPLCPPXXQXXPXXXPTLPRXPNRXXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXP 641
PP CPP P LP P P PP PP PP P P P
Sbjct: 27 PPPCPPPPPPM-CAPPPLPCPP----PPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/92 (27%), Positives = 26/92 (28%)
Frame = -1
Query: 640 GXXGXGXXGGLGGDXXXRXXGGPXXXXXXXXGXXXRLGXLGXVGXXXGXCWXXGGXRGGX 461
G G G GG GG G G G G G G + GG GG
Sbjct: 155 GGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG 214
Query: 460 XXDXTRTXAXPXGRXEXPXGXGXGGGXAXXGG 365
P G G G G G GG
Sbjct: 215 YGGGGDGGYGPSGGYGGGYGPGGGYGMGGGGG 246
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Frame = +3
Query: 468 PLCPPXXQXXPXXXPTLPRXP--NRXXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXP 632
P PP P PT+P P N P PP P PP P P
Sbjct: 259 PTKPPTPTSRPTSAPTIPPQPSANSTRAPDIGKTLSTQPPRRTPQPHPKPPPPPPPP 315
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.7 bits (61), Expect = 4.9
Identities = 25/100 (25%), Positives = 27/100 (27%), Gaps = 5/100 (5%)
Frame = +3
Query: 360 RAPPXXAXPPPXPXPXGXSX---RPXGXAXVLVXSXXXPP-LCPPXXQXXPXXXPTLPRX 527
+ P PP P G S P PP C + P P L
Sbjct: 183 QCPQGPQGPPGAVGPCGPSGIPGLPGNPGYTSPPGLPGPPGPCGEAGREGPNGTPGLKGE 242
Query: 528 PNRXXXPXXXXXXLXGPPXXRXXXSPPXPP-XXPXPSXPG 644
P GPP PP PP P P PG
Sbjct: 243 PGNNSIRQISLPGRKGPPGLPGQCGPPGPPGYTPPPGPPG 282
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 510 PTLPRXPNRXXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXPS 635
P LP P R P + PP PP PP P PS
Sbjct: 123 PGLPGNPGRP--PQQPCDPITPPPCQPCPQGPPGPPGPPGPS 162
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 510 PTLPRXPNRXXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXPS 635
P LP P R P + PP PP PP P PS
Sbjct: 123 PGLPGNPGRP--PQQPCDPITPPPCQPCPQGPPGPPGPPGPS 162
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 6.5
Identities = 27/91 (29%), Positives = 27/91 (29%)
Frame = -1
Query: 631 GXGXXGGLGGDXXXRXXGGPXXXXXXXXGXXXRLGXLGXVGXXXGXCWXXGGXRGGXXXD 452
G G G GG GG G G G G G GG RGG
Sbjct: 42 GWGRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGG-GNGGGGRGGGGGG 100
Query: 451 XTRTXAXPXGRXEXPXGXGXGGGXAXXGGAR 359
GR G G GGG GG R
Sbjct: 101 GGGRGGGGGGRG---GGGGGGGGRGGGGGGR 128
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/93 (26%), Positives = 26/93 (27%)
Frame = +3
Query: 354 YRRAPPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPN 533
YR P P P P P S L P + P PT P P
Sbjct: 494 YRLPSPKPVTPEPLPSPTITDVSLAIATPSPEESDDDQELILPSPEPSPVREPT-PPPPP 552
Query: 534 RXXXPXXXXXXLXGPPXXRXXXSPPXPPXXPXP 632
R P P R PP PP P P
Sbjct: 553 REPTPREPTPE---PEPVREPTPPPPPPAKPRP 582
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.3 bits (60), Expect = 6.5
Identities = 26/98 (26%), Positives = 28/98 (28%), Gaps = 5/98 (5%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXXX 545
P PP P G + P + PP PP Q P LP P
Sbjct: 187 PTGPPGPPGKQGPKGPNGEPGAPGTPGGNALPGPP-GPPGPQGPPGADG-LPGNPGAPGV 244
Query: 546 PXXXXXXLX-----GPPXXRXXXSPPXPPXXPXPSXPG 644
P GPP PP P P S PG
Sbjct: 245 PGQVIEVPGTPGPAGPPGPPGPIGPPGQPGAPGSSQPG 282
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 27.9 bits (59), Expect = 8.6
Identities = 25/93 (26%), Positives = 27/93 (29%), Gaps = 1/93 (1%)
Frame = +3
Query: 366 PPXXAXPPPXPXPXGXSXRPXGX-AXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXX 542
PP P P G P A S PP Q P P P P+
Sbjct: 111 PPGPGGSPGKPGKPGKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPG-PPGPDGPA 169
Query: 543 XPXXXXXXLXGPPXXRXXXSPPXPPXXPXPSXP 641
P P SPP PP P P+ P
Sbjct: 170 GPAGPDGEAGSPAAP----SPPGPPGPPGPAGP 198
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/86 (25%), Positives = 24/86 (27%)
Frame = +3
Query: 369 PXXAXPPPXPXPXGXSXRPXGXAXVLVXSXXXPPLCPPXXQXXPXXXPTLPRXPNRXXXP 548
P A PP P P G + +P A PP P P P P P
Sbjct: 139 PGPAGPPGAPGPKGNNGQPGAPAQ---SGGRGPP--GPRGPAGDAGSPGQPGHPGSPGNP 193
Query: 549 XXXXXXLXGPPXXRXXXSPPXPPXXP 626
G P PP P P
Sbjct: 194 GRGGQRSRGLPGPSGRPGPPGPAGGP 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,932,859
Number of Sequences: 27780
Number of extensions: 151089
Number of successful extensions: 912
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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