Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_N11
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1687 - 35365766-35366356,35367137-35368135 30 1.8
10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131 30 2.4
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112... 29 3.1
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 28 7.2
08_02_0796 - 21300251-21300373,21300846-21301721 28 7.2
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 28 7.2
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 28 7.2
01_01_0070 - 542603-542686,542803-543441 28 7.2
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894... 28 9.5
04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800 28 9.5
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 543 APPXPPAXXPPXXAPLQALIXIXCQMSVS 457
APP PP PP P+ L+ + C +S
Sbjct: 9 APPPPPPPPPPPPPPIDRLVWLACAAPLS 37
>10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131
Length = 190
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -1
Query: 546 PAPPXPPAXXPPXXAPLQALIXIXCQMSVSTRXGEAGSAPRLSR 415
PAPP PP PP AP +I + ST G GS R R
Sbjct: 13 PAPPPPPT-PPPPPAPPANVIDLTSSPDASTTKG-GGSGNRTKR 54
>09_03_0130 -
12609417-12610462,12610786-12611040,12611139-12611253,
12611376-12611428,12611854-12612114,12612252-12612302,
12612412-12612660,12612779-12613007,12613292-12613666
Length = 877
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 546 PAPPXPPAXXPPXXAPLQALI 484
PAPP PP PP PL+ L+
Sbjct: 12 PAPPPPPPPPPPPPPPLRRLL 32
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -1
Query: 606 AXHAXPXGXXXPXXLPXXXNPAPPXPPAXXPPXXAPL 496
A H P P P+PP PP PP PL
Sbjct: 60 ADHPHPHHHVSAAPPPPQTPPSPPPPPPPPPPPPPPL 96
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = -1
Query: 564 LPXXXNPAPPXPPAXXPPXXAPLQALIXIXCQMSVSTRXGEAGSAPRLSRVQ 409
LP P PP PP P P A + + Q+ + +P RV+
Sbjct: 102 LPPPPPPPPPPPPPPQPQQHLPRTAAVAVAPQLLLHGSHQRREQSPETDRVR 153
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 561 PXXXNPAPPXPPAXXPPXXAPLQALIXIXCQMSVSTRXGEAGSAPRLSRV 412
P P PP P A P AP A+ + S S+ A +A ++ +V
Sbjct: 74 PASTPPTPPQPSASTEPSTAPPPAVDDAAARSSSSSSPASAAAARKVRKV 123
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 497 RGAXXGGXXAGGXGGAGXXXXGXXXGNXXPXG 592
RG G GG GGAG G G P G
Sbjct: 20 RGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGG 51
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -1
Query: 591 PXGXXXPXXLPXXXNPAPPXPPAXXPPXXAPLQA 490
P P P P P PP+ PP AP +A
Sbjct: 102 PPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEA 135
>12_02_1036 -
25587313-25587890,25589209-25589272,25589356-25589448,
25589533-25589683,25590474-25590539,25590594-25590907
Length = 421
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 543 APPXPPAXXPPXXAPLQALI 484
APP PP PP AP AL+
Sbjct: 38 APPPPPPPPPPPPAPAPALL 57
>04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800
Length = 389
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -1
Query: 585 GXXXPXXLPXXXNPAPPXPPAXXPPXXAPLQALIXIXCQMSVSTRXGEAG 436
G P +P P PP PPA P L A + +MS R E G
Sbjct: 18 GPPAPAPVPPPPPPPPPPPPANVPRELEELVAGYGV--RMSTVARISELG 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,599
Number of Sequences: 37544
Number of extensions: 224973
Number of successful extensions: 2678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2314
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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